PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP17230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27168.5 Da PI: 8.4788 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.7 | 2.7e-17 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r vtf kRr g++KK +EL +LCd+++++i+++ + GSMUA_AchrUn_randomP17230_001 11 IANDSTRRVTFKKRRRGLIKKVSELATLCDVKACLILYGAQ 51 89************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.32 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.54E-30 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 8.5E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-24 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.5E-17 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MARKKVKLAW IANDSTRRVT FKKRRRGLIK KVSELATLCD VKACLILYGA QEQHPSVWPS 60 FHEAARVLNE FRSMPEMEQC KKMMNQEGFL FQRIAKLQEQ LRKQERENRE LETSLLMYEG 120 LAGRSLHDVG IEDATSLAWM VEMKAQLVYD RMEHIRKEHL ASREVEPKMH VPQTVAMEKT 180 PMQVAMEELQ RQSWFVEVGC TSDQKVKFGS GDEVLPPYNA HCSPWLDPYF PLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAWIANDSTRRVTFKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387364.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M0U9Y2 | 1e-174 | M0U9Y2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP17230_001 | 1e-175 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-44 | AGAMOUS-like 80 |