PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP15560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 295aa    MW: 32760.8 Da    PI: 5.5097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP15560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.7e-191562148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd++lv++++ +G g+W++ ++  g++R++k+c++rw +yl
  GSMUA_AchrUn_randomP15560_001 15 KGPWTPEEDQILVEYIQTHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                                   79********************************************97 PP
2Myb_DNA-binding569.4e-1868113148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_AchrUn_randomP15560_001  68 RGKFSQEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113
                                    89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1391062IPR017930Myb domain
SuperFamilySSF466894.59E-3212109IPR009057Homeodomain-like
SMARTSM007179.3E-161464IPR001005SANT/Myb domain
PfamPF002498.4E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-251669IPR009057Homeodomain-like
CDDcd001671.13E-121762No hitNo description
PROSITE profilePS5129427.01363117IPR017930Myb domain
SMARTSM007178.8E-1767115IPR001005SANT/Myb domain
PfamPF002491.8E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2870118IPR009057Homeodomain-like
CDDcd001677.31E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRSPCHDEI NGLKKGPWTP EEDQILVEYI QTHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSQEEEQTIL NLHSILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM  120
GFDPMTHRPS TDFFAALPQL IALANLIDGR PWDDHTARLL AQAEATEAAA KLQCFQHLLQ  180
SASAMPNIST ADLANMSLPS IPSPTPPQCL TNDHDHDQMN QLPSIFFEPS VSNETGQCST  240
MTGFSQGEDS SLPPLADVSA ANQGDACSIS SCNGDETPYI WPEFFLDDQF MTGFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387122.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z22e-92MYB93_ARATH; Transcription factor MYB93
TrEMBLM0U9G50.0M0U9G5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP15560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-92myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]