PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP15100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 572aa    MW: 62737.1 Da    PI: 5.5779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP15100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-184188148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT  Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  GSMUA_AchrUn_randomP15100_001 41 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHTGLSRCGKSCRLRWANHL 88
                                   79******************************************9986 PP
2Myb_DNA-binding41.43.2e-1394152146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqk 46 
                                    +g++T+eE++l++++++++G++ W++ a++++               gRt++++k++w++
  GSMUA_AchrUn_randomP15100_001  94 KGAFTPEEEQLIIELHAKMGNK-WARMAAYVNfrkvysrkrnqqklPGRTDNEIKNYWNT 152
                                    799*******************.***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0013692IPR017930Myb domain
SuperFamilySSF466897.34E-2740150IPR009057Homeodomain-like
SMARTSM007171.6E-154090IPR001005SANT/Myb domain
PfamPF002496.8E-164188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-244295IPR009057Homeodomain-like
CDDcd001677.81E-124388No hitNo description
PROSITE profilePS5129415.70693158IPR017930Myb domain
SMARTSM007177.2E-1493156IPR001005SANT/Myb domain
PfamPF002496.0E-1394152IPR001005SANT/Myb domain
CDDcd001674.11E-996152No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2296157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MNSLPNDSDK RMIPKDQIDS PSIEEGNSSG SLNGGNQVLK KGPWTSAEDA ILVDYVKKHG  60
EGNWNAVQKH TGLSRCGKSC RLRWANHLRP NLKKGAFTPE EEQLIIELHA KMGNKWARMA  120
AYVNFRKVYS RKRNQQKLPG RTDNEIKNYW NTRIKRRQRA GLPLYPPNIC YQVSCENQQS  180
NHSSDYSYNE KQPDEFLQGG NLDIPDIVFD NYTNNGSLSY APSFPDIAVS SILSHRFGFQ  240
NYALPNPPVC CVERPVETEH VVPASNGTVN GGCPRLDNVI FEPSGKMQES FGLSCLYDPD  300
SSSDSLAHHG GAIPGSCASL NDTFSASSLI PGTLKLELPS LQYTETDSNS WLACSSTPFD  360
LVNTYVKSPP TASLQTDCVS PRKSGLLEAL LHEAHVLSSA KKEPSEKISI SFITPAELAD  420
GPKLSINDLK LVEHKDPVSP LGRSAAFVFN DGTPLISGNL LDEFPHPLAP SNLDSILVDA  480
EHVSSPNLGE QDISHCRDSF RPDALLGSAW LENSSQNAID HSVFNDAISI LLGQDMCNEY  540
KPVPAETSSG VMQGFGLDSY PWNNMPSACQ MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29391575107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387062.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_009387063.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_009387064.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_018677225.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLM0U9B90.0M0U9B9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP15100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.13e-93myb domain protein 65