PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP14770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 884aa    MW: 99060.6 Da    PI: 7.1293
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP14770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.5e-22162263199
                                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                    f+k+lt sd++++g +++ +++a+e+     +++++ s++l+ +d++g +W +++i+r++++r++l++GW+ Fv++++L 
  GSMUA_AchrUn_randomP14770_001 162 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQQPPSQELVAKDLHGVEWHFRHIFRGQPRRHLLQSGWSVFVSSKRLV 241
                                    99*****************************55566678***************************************** PP

                                    TT-EEEEEE-SSSEE..EEEEE-S CS
                             B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                    ++D ++F   + ++ el+v+v+r+
  GSMUA_AchrUn_randomP14770_001 242 ARDAFIFL--RGENSELRVGVRRA 263
                                    ********..3477888****985 PP
2Auxin_resp105.94.8e-35288369183
                     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                                    a+ha++t+++F+v+Y+Pr++++eF+v++++v +++k++ s+GmRfkm+fe+e+ +e+r++Gt+vg+ d+dp+rW++SkWr
  GSMUA_AchrUn_randomP14770_001 288 AWHAVNTGTMFTVYYKPRMCPTEFIVPFDHV-DSIKSNHSIGMRFKMRFEGEETPEQRFTGTIVGIGDADPSRWTGSKWR 366
                                    89**************************987.6899******************************************** PP

                     Auxin_resp  81 sLk 83 
                                    +Lk
  GSMUA_AchrUn_randomP14770_001 367 CLK 369
                                    *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-39155291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-40155277IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-20161262No hitNo description
PROSITE profilePS5086310.785162264IPR003340B3 DNA binding domain
PfamPF023625.1E-20162263IPR003340B3 DNA binding domain
SMARTSM010191.9E-19162264IPR003340B3 DNA binding domain
PfamPF065073.6E-32288369IPR010525Auxin response factor
PROSITE profilePS5174520.481731813IPR000270PB1 domain
SuperFamilySSF542778.83E-11736808No hitNo description
PfamPF023096.9E-8776819IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MASSEVSVKG SRGRGEGLSS GCSEPREAAP MRDDDEERSL GLSGGAAVRK DSEDALYTEL  60
WHACAGPLVT IPRMGEKVFY FPQGHVEQVE ASTNQVADQQ MPVYNLPWKI LCRVMNVDLK  120
AEPDTDEVYA QITLLPDPKQ DENTVEKETL APPPPRPHVY SFCKTLTASD TSTHGGFSVL  180
RRHADECLPP LDMSQQPPSQ ELVAKDLHGV EWHFRHIFRG QPRRHLLQSG WSVFVSSKRL  240
VARDAFIFLR GENSELRVGV RRALRQQTNV PSSVISSHSM HLGVLATAWH AVNTGTMFTV  300
YYKPRMCPTE FIVPFDHVDS IKSNHSIGMR FKMRFEGEET PEQRFTGTIV GIGDADPSRW  360
TGSKWRCLKV RWDEASLIPR PERVSPWKIE PVLTPPPNPG PMPRPKRPRT SNVPSSPDSS  420
VLTKEAASKA GPCQSHEVSR VLQGQDMMAF RSTFADSNES DTTQKPLMWS VCDEKINDVS  480
ALRRSVSERW MHTKMHEQTY TDILSGFQPG DSSGFHSPGD KNLLKSHFQD QGAKHNCSPG  540
SRSLMPPNSN FSIGECNLKM TRVVELSYQK LGSYRYDMQG VHTELQELGG DRHSENWLPR  600
FLQDSRTENM PQTRVVKPQP LAPSQNDVVK SKGNSGCKLF GFHLNSKPVT SVSTTLTNGD  660
TEKPNQVCQQ APKDVQNKLQ GGSTRSCTKA SFLFLLNQFE TYSFYVLFVS DIKCRFSCQY  720
KIRSINADNI DRPKEVHKQG IALGRSVDLS KFSGYDELIA ELDQIFDFKG ALLAPNKNWL  780
VVYTDNEGDM MLVGDDPWNE FCNMVRKIYI YTREEVQSMN PGTLNSRLEE SPATSEENSS  840
GKKTNSPVHG TNRENSEGCA ELSRSLEDVK PKKLDVAFCD GSNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1695439217355Auxin response factor 1
4ldw_A1e-1695439217355Auxin response factor 1
4ldw_B1e-1695439217355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404410PKRPRTS
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387024.10.0PREDICTED: auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLM0U9860.0M0U986_MUSAM; Auxin response factor
STRINGGSMUA_AchrUn_randomP14770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]