PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP14580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 319aa    MW: 35250.3 Da    PI: 7.7036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP14580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1966116155
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a+++++g
  GSMUA_AchrUn_randomP14580_001  66 CQYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTALEAAVAYDEAARAMYG 116
                                    68*****999.**********8...2.359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1266116IPR001471AP2/ERF domain
CDDcd000184.60E-2866125No hitNo description
PROSITE profilePS5103221.45667124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3067125IPR001471AP2/ERF domain
SMARTSM003801.2E-3467130IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2167125IPR016177DNA-binding domain
PRINTSPR003672.4E-96879IPR001471AP2/ERF domain
PRINTSPR003672.4E-990106IPR001471AP2/ERF domain
PfamPF011908.1E-11205281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAMEQERKKR QPRRGHDGPN SVAETIARWR EHNGQLDADN CVRRAPAKGS KKGCMKGKGG  60
PDNPNCQYRG VRQRTWGKWV AEIREPNRGN RLWLGTFPTA LEAAVAYDEA ARAMYGPYAR  120
LNLPERYGDS QLGATNGSCE SCMTSHQSHS DVGISSSGET EVIPKIEKTD ERDNGLSSSG  180
NHKIEHSQPG YWNEDFPIDE IFLEALRLPA ARVGITCKDH RGRVVLYRAA TADDNGYVFA  240
ELYTTTMRGG YFDPAESCAV RLLVSPDDRC SSVTDVNGGD RGTPLRYQNT TIPGQYADLD  300
VYVAGPLAFK PAYCPPKTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1567126565ATERF1
3gcc_A2e-1567126565ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386995.11e-151PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM0U9670.0M0U967_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP14580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-31DRE-binding protein 2A