PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP13810_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 354aa MW: 39950 Da PI: 6.3265

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP13810_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.6e-11	65	106	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 ++k+ rr+++NReAA++sR+RKka++++Le k ++Le+e GSMUA_AchrUn_randomP13810_001 65 SDKVLRRLAQNREAAKKSRLRKKAYVQQLESsrlKLAQLEQE 106 799***************************833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-9	59	113	No hit	No description
SMART	SM00338	1.0E-4	63	126	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-8	65	107	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	65	109	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.83E-7	67	113	No hit	No description
PROSITE pattern	PS00036	0	70	85	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-30	154	228	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MGIYEPNHQI GMWEDSFKAD SSQNTCASTI VETDTKLDYM AELEDIPRKE LGQPKKYGQE 60 TSHSSDKVLR RLAQNREAAK KSRLRKKAYV QQLESSRLKL AQLEQELEQA RQQAVYIGGH 120 LRETNIGLSG SVNSGIAAFE MEYGHWVEEQ NRQTSDLRTA LQAHASDVEL EMLVESGIRH 180 YDNLFRIKAV TAKSDVFYLI SGMWRTPTER FFLWIGGFRP SELLKVVSSQ LDPMTEQQKS 240 AVSGLRQSSQ QAEDALSQGL ERLQETLSET LTCDPSGTPG VTNYMEQMAN AMGKLEALVS 300 FVNQADLLRQ QALRQMYSIL TTHQAARGLL ALGDYFQRLR ALSSLWAARP HDPT

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MGIYEPNHQI GMWEDSFKAD SSQNTCASTI VETDTKLDYM AELEDIPRKE LGQPKKYGQE  60
TSHSSDKVLR RLAQNREAAK KSRLRKKAYV QQLESSRLKL AQLEQELEQA RQQAVYIGGH  120
LRETNIGLSG SVNSGIAAFE MEYGHWVEEQ NRQTSDLRTA LQAHASDVEL EMLVESGIRH  180
YDNLFRIKAV TAKSDVFYLI SGMWRTPTER FFLWIGGFRP SELLKVVSSQ LDPMTEQQKS  240
AVSGLRQSSQ QAEDALSQGL ERLQETLSET LTCDPSGTPG VTNYMEQMAN AMGKLEALVS  300
FVNQADLLRQ QALRQMYSIL TTHQAARGLL ALGDYFQRLR ALSSLWAARP HDPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF582554	0.0	KF582554.1 Musa acuminata AAA Group cultivar Cavendish transcription factor tga1 (TGA3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386888.1	0.0	PREDICTED: transcription factor TGA4-like isoform X3
Swissprot	Q39162	1e-148	TGA4_ARATH; Transcription factor TGA4
TrEMBL	M0U8Z0	0.0	M0U8Z0_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP13810_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-133	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]