PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP13180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 458aa    MW: 49289.7 Da    PI: 7.1309
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP13180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.32e-25172227359
                                    -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                    D y+WrKYGqK+vk++e+ rsYYrC+ ++C +kkkve+   d+k+++++Y+g+Hnh+
  GSMUA_AchrUn_randomP13180_001 172 DIYHWRKYGQKQVKNTENFRSYYRCADSNCLAKKKVECYP-DGKICDVIYRGKHNHD 227
                                    99**************************************.***************7 PP
2WRKY106.71.2e-33347404259
                                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                    +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ver+++d + + itYeg+Hnh+
  GSMUA_AchrUn_randomP13180_001 347 SDGYRWRKYGQKLVKGNPNPRSYYRCTHDGCPVRKHVERASHDAQSLLITYEGKHNHD 404
                                    7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.99165229IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-23165229IPR003657WRKY domain
SuperFamilySSF1182903.01E-20169229IPR003657WRKY domain
SMARTSM007744.6E-24170228IPR003657WRKY domain
PfamPF031062.0E-19172227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-33333406IPR003657WRKY domain
SuperFamilySSF1182901.83E-28339406IPR003657WRKY domain
PROSITE profilePS5081134.176341406IPR003657WRKY domain
SMARTSM007745.6E-39346405IPR003657WRKY domain
PfamPF031068.9E-27348404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTEEGDGSAT PQEDKPRGGD DDGGTPPSPS SERPPPADLG SDATAVGKGG GSGAVPAAKA  60
DGRSFSQLLA GAMASPVGSP RPPPILTVPV VAVPCLLAPA ALLESPGFTG QFAMTHQAVL  120
AAVTAQAQMQ MQAAYPPPSE TTTNSFPHSM LPAVSPVPLQ QMSSVPEACS GDIYHWRKYG  180
QKQVKNTENF RSYYRCADSN CLAKKKVECY PDGKICDVIY RGKHNHDPPQ KYRYTRDRGA  240
QSGGSSRENE SIERLKNELN ESGSSSCKAE QNSGNDTPEQ QLDHSSDCKG VAGVTTKKDF  300
GDEPDPKRRQ VVKRLLLSEN TKSFSMPVPK QVKEHVVQTE IDAKHLSDGY RWRKYGQKLV  360
KGNPNPRSYY RCTHDGCPVR KHVERASHDA QSLLITYEGK HNHDQPTPKF ASDQPASDTP  420
EGAQSLPSSK GGSESTDPDG MRNPLLSENP AAVPVENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27337406877Probable WRKY transcription factor 4
2lex_A2e-27337406877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386827.10.0PREDICTED: probable WRKY transcription factor 4
TrEMBLM0U8S70.0M0U8S7_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP13180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-60WRKY DNA-binding protein 4