PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP12700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35961.2 Da PI: 4.8208 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+lv++++ G g+W++ ++ g+ R++k+c++rw +yl GSMUA_AchrUn_randomP12700_001 14 KGRWTAEEDEILVKYIAANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l GSMUA_AchrUn_randomP12700_001 67 RGNITRDEEDIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.617 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.27E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.71E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.626 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDEILVKYIA ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI TRDEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKIQSFR 120 RTGMDSKAAV LDLSKLRGGG GRQQGACIDR SAMKKTNTMN REIRRDKQDM ADIRPPASVV 180 QSDEGHIMVS DPDQNQQASS VTFDGITMDP NEEMVSELWD TDADMEHVLF GPSEESMIGW 240 GYTQADSGVM STSRVELASK SEDEMGSWQR EKLLEWDLGA NEEAGEMWPW MWDSGNGELA 300 LRGVDDSGYQ EGSLDDGWLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 12 | 118 | 5 | 110 | B-MYB |
1h8a_C | 2e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386785.1 | 0.0 | PREDICTED: myb-related protein P-like | ||||
Swissprot | P27898 | 1e-76 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | M0U8M9 | 0.0 | M0U8M9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP12700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 6e-75 | myb domain protein 111 |