PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP12700_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 320aa    MW: 35961.2 Da    PI: 4.8208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP12700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +grWT+eEde+lv++++  G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_AchrUn_randomP12700_001 14 KGRWTAEEDEILVKYIAANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                   79******************************99************97 PP

2Myb_DNA-binding51.62.2e-1667112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg+ T +E+++++++++ lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_AchrUn_randomP12700_001  67 RGNITRDEEDIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                                    7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.617961IPR017930Myb domain
SuperFamilySSF466893.27E-2811108IPR009057Homeodomain-like
SMARTSM007178.5E-131363IPR001005SANT/Myb domain
PfamPF002496.5E-151461IPR001005SANT/Myb domain
CDDcd001674.71E-91661No hitNo description
PROSITE profilePS5129425.62662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2565116IPR009057Homeodomain-like
SMARTSM007175.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001672.12E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILVKYIA ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TRDEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKIQSFR  120
RTGMDSKAAV LDLSKLRGGG GRQQGACIDR SAMKKTNTMN REIRRDKQDM ADIRPPASVV  180
QSDEGHIMVS DPDQNQQASS VTFDGITMDP NEEMVSELWD TDADMEHVLF GPSEESMIGW  240
GYTQADSGVM STSRVELASK SEDEMGSWQR EKLLEWDLGA NEEAGEMWPW MWDSGNGELA  300
LRGVDDSGYQ EGSLDDGWLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121185110B-MYB
1h8a_C2e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386785.10.0PREDICTED: myb-related protein P-like
SwissprotP278981e-76MYBP_MAIZE; Myb-related protein P
TrEMBLM0U8M90.0M0U8M9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP12700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.16e-75myb domain protein 111
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]