PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP11980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 569aa    MW: 63991.2 Da    PI: 4.5456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP11980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-52151412128
                            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 
                                    ppGfrFhPtdeelv +yLk+k  g++++l  vi evd+yk+ePw+Lp k  +k+++k+wyfFs+rd+ky++g+r+nrat+
  GSMUA_AchrUn_randomP11980_001  15 PPGFRFHPTDEELVLYYLKRKFCGRRVKL-PVIGEVDVYKWEPWELPeKsVLKSGDKQWYFFSPRDRKYPNGSRSNRATE 93 
                                    8*************************999.89**************96357788999*********************** PP

                            NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     gyWkatgkd+++ + +++++g kktLv+y+grapkge+tdWvmhey+l
  GSMUA_AchrUn_randomP11980_001  94 FGYWKATGKDRTISQ-NSKATGNKKTLVYYHGRAPKGERTDWVMHEYTL 141
                                    *************99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5712162IPR003441NAC domain
PROSITE profilePS5100556.1114162IPR003441NAC domain
PfamPF023651.5E-2615141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGDDRFSLGE SRWWPPGFRF HPTDEELVLY YLKRKFCGRR VKLPVIGEVD VYKWEPWELP  60
EKSVLKSGDK QWYFFSPRDR KYPNGSRSNR ATEFGYWKAT GKDRTISQNS KATGNKKTLV  120
YYHGRAPKGE RTDWVMHEYT LDDQVLLSYD NDSYALYKVF MKSGPGPKNG EQYGAHFREE  180
EWVDEAADES FKSQDNIELS RNQENIEAPI TKPLHHLTSS GVMHDAGNTL PINELEDLLL  240
KLPEEQDMVG QFSEHSAYIS EVDVETEAGK HNFSPPSTET TTSFEDDSTR CELSILEASF  300
QVAEPHSCFV QPVENPEMTS LTYNSHQSPE ETHGEFLEIK DFNEPESVIW SGNNSSNGDQ  360
TDGSDGFYDS YDYFDDPLSF YNDFEPLGFP AQNSYLDSFG DDGVLNESYH VLTNLWEHNL  420
VSGFSNADTN RIFMASPASG VPYASASSNI EKPEEQGTHV RGTSESWLSS ALSNLLDSVP  480
SSPALASENT FINRALERVS SFRSGQVGVH GPNTTTGEHA ATSIRRGDHR NEGVLFISLL  540
VGLGAVFWVL TVGATITVFK GFLARFNSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-521514116140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386703.10.0PREDICTED: NAC domain-containing protein 17-like
TrEMBLM0U8F70.0M0U8F7_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP11980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1851269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.17e-82NAC domain containing protein 17