PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP11880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 169aa    MW: 19370.2 Da    PI: 8.9063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP11880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-151461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   rg+WT+eEd++l+  +   G ++W+++++  g+ R++k+c++rw +yl
  GSMUA_AchrUn_randomP11880_001 14 RGPWTAEEDQKLISFILNNGIHRWRLVPKLAGLMRCGKSCRLRWTNYL 61
                                   89********************************************97 PP
2Myb_DNA-binding55.21.6e-1767110146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg+ ++eE+ ++++++  lG++ W++Ia++++ gRt++++k++w++
  GSMUA_AchrUn_randomP11880_001  67 RGAISEEEENQIIQLHSSLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                                    7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.534961IPR017930Myb domain
SuperFamilySSF466891.23E-2911108IPR009057Homeodomain-like
SMARTSM007172.2E-101363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-231568IPR009057Homeodomain-like
CDDcd001673.08E-81661No hitNo description
PROSITE profilePS5129427.59962116IPR017930Myb domain
SMARTSM007179.6E-1766114IPR001005SANT/Myb domain
PfamPF002494.8E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2669116IPR009057Homeodomain-like
CDDcd001671.74E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGRRPCCDNS GLKRGPWTAE EDQKLISFIL NNGIHRWRLV PKLAGLMRCG KSCRLRWTNY  60
LRPDLKRGAI SEEEENQIIQ LHSSLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLELLR  120
SSGSCSSSFC ASSMASALDT EETKLCYDSF PPWEAMYPFE DLVLHGSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386695.17e-84PREDICTED: protein ODORANT1-like
SwissprotQ9C7U72e-63MYB20_ARATH; Transcription factor MYB20
TrEMBLM0U8E71e-122M0U8E7_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP11880_0011e-123(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.15e-68myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]