PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP11300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 635aa    MW: 71011.9 Da    PI: 7.2581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP11300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23124224198
                                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                    f+k+lt sd++++g +++ +++a+e+     +++++  ++l+ +d++g++W++k+i+r++++r++lt+GW+ Fv +++L 
  GSMUA_AchrUn_randomP11300_001 124 FCKILTASDTSTHGGFSVLRRHATEClppldMSQQTPAQELVAKDLHGQEWRFKHIFRGQPRRHLLTTGWSTFVASKKLA 203
                                    99****************************9555555669**************************************** PP

                                    TT-EEEEEE-SSSEE..EEEEE- CS
                             B3  76 egDfvvFkldgrsefelvvkvfr 98 
                                    +gD ++++  + ++ el+v+v+r
  GSMUA_AchrUn_randomP11300_001 204 AGDALILM--RGENDELRVGVRR 224
                                    ********..3488889***998 PP
2Auxin_resp104.61.2e-34250329183
                     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                                    a+ha+st+s F+v+Y+Pr+  s+F+v v+k+++++k++++vGmRfkm+fe+ed++e+r++Gt++g+ d+++ +Wp SkWr
  GSMUA_AchrUn_randomP11300_001 250 ASHAISTHSLFTVYYKPRT--SQFIVGVNKYLETIKNEFTVGMRFKMRFEGEDVPEKRFTGTITGIGDISS-QWPCSKWR 326
                                    789***************6..9**********************************************777.******** PP

                     Auxin_resp  81 sLk 83 
                                    sLk
  GSMUA_AchrUn_randomP11300_001 327 SLK 329
                                    *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-41111253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-39116239IPR015300DNA-binding pseudobarrel domain
CDDcd100172.91E-18122224No hitNo description
PROSITE profilePS5086311.42124226IPR003340B3 DNA binding domain
PfamPF023624.1E-21124224IPR003340B3 DNA binding domain
SMARTSM010197.1E-21124226IPR003340B3 DNA binding domain
PfamPF065072.3E-32250329IPR010525Auxin response factor
PfamPF023094.2E-11520618IPR033389AUX/IAA domain
SuperFamilySSF542771.26E-7526607No hitNo description
PROSITE profilePS5174522.818531623IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAAGSASRAT ERLKEGDGLY EELWRACAGP LVEVPRVDER VFYFPQGHLE QLETWTDQEL  60
NQHIPLFNLP PKILCRVVNI NLKAEPETDE AYAQITLIPE SDQNEPTCPV PCVVEPPRPA  120
VHSFCKILTA SDTSTHGGFS VLRRHATECL PPLDMSQQTP AQELVAKDLH GQEWRFKHIF  180
RGQPRRHLLT TGWSTFVASK KLAAGDALIL MRGENDELRV GVRRLVHRQN TMPSSVISSH  240
SMHVGVLATA SHAISTHSLF TVYYKPRTSQ FIVGVNKYLE TIKNEFTVGM RFKMRFEGED  300
VPEKRFTGTI TGIGDISSQW PCSKWRSLKV QWDEASSILR PEKISPWDVE PFGGSMSTSS  360
DAQAGFIKNK RAWSPLDLLG HEPSSTIWNP AKAQISDLGS MSSIIAQSLE KRFLWFSGQT  420
ESIDNNSLHS PSSCNRRLSD HWLRDSKSPL ESTSSSLINV SLKLSKGTKK PKSGSGYRLF  480
GIDLVCPSND ISSTMKLSVE VVSQSNATIE DPQVLQVSPK EIQRKQNSST RSCIKVHMQG  540
IGVGRAVDLA NFEGYDELML ELEQMFEIKG ELRCHKKWEV AFNDDDGVMI LVGDYPWPVF  600
CKLARKIFIY ASEEVKKMEP KSKLPAVPST DGEAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17213531356Auxin response factor 1
4ldw_A1e-17213531356Auxin response factor 1
4ldw_B1e-17213531356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386645.10.0PREDICTED: auxin response factor 9 isoform X3
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLM0U8890.0M0U889_MUSAM; Auxin response factor
STRINGGSMUA_AchrUn_randomP11300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]