PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP11290_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Nin-like | ||||||||
Protein Properties | Length: 189aa MW: 21715 Da PI: 8.8243 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.2 | 2.8e-27 | 72 | 120 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++++++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl GSMUA_AchrUn_randomP11290_001 72 GLGFDEIKNYFYMPITKAAKEMNVGLTVLKKRCRELGIARWPHRKMKSL 120 6889*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.154 | 55 | 143 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.4E-22 | 73 | 120 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MESDDIDLDS FAWSCNLSSD AVDVRLDPLP LPACDLPFGP FETSGEGGDV PIWDGRKTSE 60 KRGCGRASRL NGLGFDEIKN YFYMPITKAA KEMNVGLTVL KKRCRELGIA RWPHRKMKSL 120 KSLVRNVQAM GKGTFEEDGV RKELETLEEH RRLMEENPEI QLTERTKKLR QACFKANYKR 180 RRLLHHPCF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 182 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396639.1 | 2e-78 | PREDICTED: protein RKD1-like | ||||
Swissprot | Q9LVU8 | 1e-39 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | M0U888 | 1e-138 | M0U888_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP11290_001 | 1e-139 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 4e-42 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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