PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP11290_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 189aa    MW: 21715 Da    PI: 8.8243
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP11290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.22.8e-2772120452
                         RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                     + ++++++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl
  GSMUA_AchrUn_randomP11290_001  72 GLGFDEIKNYFYMPITKAAKEMNVGLTVLKKRCRELGIARWPHRKMKSL 120
                                    6889*******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.15455143IPR003035RWP-RK domain
PfamPF020426.4E-2273120IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MESDDIDLDS FAWSCNLSSD AVDVRLDPLP LPACDLPFGP FETSGEGGDV PIWDGRKTSE  60
KRGCGRASRL NGLGFDEIKN YFYMPITKAA KEMNVGLTVL KKRCRELGIA RWPHRKMKSL  120
KSLVRNVQAM GKGTFEEDGV RKELETLEEH RRLMEENPEI QLTERTKKLR QACFKANYKR  180
RRLLHHPCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396639.12e-78PREDICTED: protein RKD1-like
SwissprotQ9LVU81e-39RKD4_ARATH; Protein RKD4
TrEMBLM0U8881e-138M0U888_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP11290_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.14e-42RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]