PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP10790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 273aa    MW: 31047.1 Da    PI: 8.1178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP10790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.8e-171462148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEd++l+++++++G+g +W + +++ g++R++k+c++rw++yl
  GSMUA_AchrUn_randomP10790_001 14 KGTWSPEEDKQLKEYIERHGTGrNWIALPQKAGLRRCGKSCRLRWLNYL 62
                                   799********************************************97 PP
2Myb_DNA-binding36.31.3e-1169111246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g ++ eEd ++  ++   G++ W+ Ia  ++ gRt++++k++w++
  GSMUA_AchrUn_randomP10790_001  69 GDFSDEEDRIICSLFVSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                                    679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.737962IPR017930Myb domain
SuperFamilySSF466895.01E-2612109IPR009057Homeodomain-like
SMARTSM007175.4E-121364IPR001005SANT/Myb domain
PfamPF002494.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-241569IPR009057Homeodomain-like
CDDcd001672.09E-91662No hitNo description
PROSITE profilePS5129421.42363117IPR017930Myb domain
SMARTSM007172.3E-1067115IPR001005SANT/Myb domain
PfamPF002496.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2270117IPR009057Homeodomain-like
CDDcd001673.31E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRAPCCDKA KVKKGTWSPE EDKQLKEYIE RHGTGRNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC SLFVSIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLFDQ  120
PPSHRNPHHQ QHYRTQSFSS NLEMAVPFPD LEGIPIHPSL FDSLTPTFFS PLCQRPAYQS  180
GNLIMFGGDQ PSCSSSDGSS IHTGYGSEHM SSENHLHEKL LPCGEASLRY EFDEPSQLHA  240
CPVDAFDKLY LDSKSSATMD MSLRNMARAI YHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386595.10.0PREDICTED: transcription factor RAX2
TrEMBLM0U8380.0M0U838_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP10790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-73myb domain protein 36