PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_AchrUn_randomP10760_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17828.8 Da PI: 4.1898 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 58 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+++AeIrd s++g +r++lg+f+tae Aa a+++a+ +++g GSMUA_AchrUn_randomP10760_001 58 PCYRGVRKRP-WGKFAAEIRD-STRG-GARVWLGTFDTAEAAALAYDQAAFSMRG 109 68********.**********.3433.4*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-15 | 58 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 59 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-23 | 59 | 119 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 59 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-37 | 59 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.95E-21 | 60 | 118 | No hit | No description |
PRINTS | PR00367 | 4.3E-11 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MDPSYLQSQS YDEFSPEDSY RLPFDVNDSD EMLLFDTLAE ATPSNPVLAG EGRPTGEPCY 60 RGVRKRPWGK FAAEIRDSTR GGARVWLGTF DTAEAAALAY DQAAFSMRGR LAVLNFPVEQ 120 VQEPAVSGKT KVAQSRIQSV LELEDLGTDY LEELLRVSEL A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-28 | 49 | 119 | 4 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386590.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-44 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M0U835 | 1e-113 | M0U835_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP10760_001 | 1e-114 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-35 | ethylene response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|