PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP09280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 427aa    MW: 48420.2 Da    PI: 10.8107
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP09280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.24.4e-18130227286
                       trihelix   2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                                    Wt +e+l+Li+a+r ++er    +           +++++W++v +++++ g+ rs++qC++kw+nl ++ykk++  e++
  GSMUA_AchrUn_randomP09280_001 130 WTLHETLVLITAKRLDDERRAGVSsspaggggalrSAEQRWKWVENYCWRNGCLRSQNQCNDKWDNLLRDYKKVRGYESR 209
                                    **************777776643234566677777****************************************99888 PP

                       trihelix  71 rt..sessstcpyfdqle 86 
                                     +  +++s + p +  +e
  GSMUA_AchrUn_randomP09280_001 210 VSaaAGASGELPSYWTME 227
                                    742255555666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.806122197IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-4125199IPR009057Homeodomain-like
PfamPF138376.6E-12129208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTQNVRVVWS ISTVRGERRK KGSFGEGAIR KRKRHNACFP NAAISLNPVP LPFPLPLVVR  60
FPFLSLVIER EKKRKIATRA DAHKAMSEAT DQNALALLHH HHHPPPAQPH PLVSPSSAGA  120
IVRDYRKGNW TLHETLVLIT AKRLDDERRA GVSSSPAGGG GALRSAEQRW KWVENYCWRN  180
GCLRSQNQCN DKWDNLLRDY KKVRGYESRV SAAAGASGEL PSYWTMERHE RKERNLPTNL  240
AVEVFEALTD VLTRRAARRA NATTKMSNAI SYDASQAFHL AMQPCCIIRT KRLNVFFGFY  300
VSKRTAFFLL HSCVVHRAAE MSESEENEGP ATTTTTEEPD TKRRRLRRLG SSVVRSATVL  360
ARTMLACEEK RELRHRELVE LQERRLRLEE DRTEVRRQGF AGLISAVDNL SGAIHALVAD  420
RRSGDHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11833RKKGSFGEGAIRKRKR
2341345KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664008.11e-102trihelix transcription factor GTL1-like
TrEMBLM0U7N80.0M0U7N8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP09280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.14e-42Trihelix family protein