PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP08600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 281aa    MW: 31898.6 Da    PI: 6.0521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP08600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-181865148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   rg+WT +Ed++l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  GSMUA_AchrUn_randomP08600_001 18 RGPWTVDEDLILINYIAAHGEGQWNSLARSAGLRRTGKSCRLRWLNYL 65
                                   89********************************************97 PP
2Myb_DNA-binding53.45.9e-1771114146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_AchrUn_randomP08600_001  71 RGNITPEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 114
                                    7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5761365IPR017930Myb domain
SuperFamilySSF466894.87E-3115112IPR009057Homeodomain-like
SMARTSM007171.5E-141767IPR001005SANT/Myb domain
PfamPF002493.7E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-221972IPR009057Homeodomain-like
CDDcd001671.53E-102065No hitNo description
PROSITE profilePS5129423.9266120IPR017930Myb domain
SMARTSM007173.6E-1570118IPR001005SANT/Myb domain
PfamPF002497.4E-1671114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2373119IPR009057Homeodomain-like
CDDcd001672.31E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEFHESTPQS EEELDLRRGP WTVDEDLILI NYIAAHGEGQ WNSLARSAGL RRTGKSCRLR  60
WLNYLRPDVR RGNITPEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA  120
KQLKCDVNSK QFKDVMRYLW MPRLVERIRA SSGNQVLSTP HEDDTFPMTC APQPNQVPEL  180
ARVKRSPQKS STAGPASSSS SSDSRGVQFS PPPVSDGYFG STTGGDDNIG DVIQTGECTG  240
SWWESLPSPG GDTVLGFPEL DQITWGESLW SVEDIWLQQQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25151184106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386341.20.0PREDICTED: transcription factor MYB3-like
SwissprotQ10MB43e-93MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM0U7H00.0M0U7H0_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP08600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.19e-85myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]