PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP08590_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 153aa MW: 17142.6 Da PI: 8.7025

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP08590_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.4	5.6e-09	62	83	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtG CkyGd+Ck+ H++ GSMUA_AchrUn_randomP08590_001 62 CHHFVRTGVCKYGDTCKYFHPK 83 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	6.8E-4	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	1.81E-15	4	47	No hit	No description
Pfam	PF06220	1.3E-9	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	13.723	56	84	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	58	83	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-7	60	85	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-7	61	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-7	61	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGLH HHRARALWYD SFKEPHGAPL FQPYGSLAKG 60 VCHHFVRTGV CKYGDTCKYF HPKQDVLNPT PAVTGMKYME AIQIQNSLAS NLPGDSMSGN 120 IINQGGISWG NLPPSLRPPP EGGYPPLLFL EWG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727992	7e-33	KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386340.1	1e-113	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q0JP11	1e-53	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	M0U7G9	1e-111	M0U7G9_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP08590_001	1e-112	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	5e-42	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]