PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP08220_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 261aa MW: 30464.9 Da PI: 8.4501

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP08220_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.5	1.6e-46	10	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 pGfrFhPt+ el+++yL++ v+g+kl++ ++i +++iy+++Pw+Lp +k +e+ewyfF++rd+k+ + r+nr+t++g GSMUA_AchrUn_randomP08220_001 10 LPGFRFHPTEAELLDFYLRRVVRGEKLDF-DFIGSLNIYHYDPWELPGLAKVGEREWYFFVPRDRKSGNRGRANRTTERG 88 59************************9.99***********8888899********************** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg d+++ s +++l glkktLvfy+grap+g+ktdW+m+eyrl GSMUA_AchrUn_randomP08220_001 89 FWKATGCDRQIRSLadSKHLLGLKKTLVFYQGRAPRGTKTDWIMNEYRL 137 *******998767888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.905	9	160	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-56	9	160	IPR003441	NAC domain
Pfam	PF02365	8.9E-24	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MERNDFELHL PGFRFHPTEA ELLDFYLRRV VRGEKLDFDF IGSLNIYHYD PWELPGLAKV 60 GEREWYFFVP RDRKSGNRGR ANRTTERGFW KATGCDRQIR SLADSKHLLG LKKTLVFYQG 120 RAPRGTKTDW IMNEYRLPDS YSAAISTPQQ VIVLCKIYRK ATSMKELEQR AASEEKRKEA 180 QICSAMADNV SIFSAPSECM DVKEMEAPKK VEVTSTTFRS VKLPELQIPM DSLDWMQDPF 240 LTQLRSPWLD QWSPCANILY F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-44	11	166	22	174	NAC domain-containing protein 19
3swm_B	1e-44	11	166	22	174	NAC domain-containing protein 19
3swm_C	1e-44	11	166	22	174	NAC domain-containing protein 19
3swm_D	1e-44	11	166	22	174	NAC domain-containing protein 19
3swp_A	1e-44	11	166	22	174	NAC domain-containing protein 19
3swp_B	1e-44	11	166	22	174	NAC domain-containing protein 19
3swp_C	1e-44	11	166	22	174	NAC domain-containing protein 19
3swp_D	1e-44	11	166	22	174	NAC domain-containing protein 19
3ulx_A	8e-45	7	160	12	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386283.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	1e-100	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M0U7D3	0.0	M0U7D3_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP08220_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-86	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]