PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP08190_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 355aa MW: 40492.8 Da PI: 8.7715

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP08190_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	5e-53	6	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................kvka..... 53 lppGfrFhPtdeelv +yLk+k++g ++el e+i+evd+yk+ePw+Lp k + GSMUA_AchrUn_randomP08190_001 6 LPPGFRFHPTDEELVAYYLKRKINGYRFEL-EIIPEVDLYKCEPWELPGisflpisilnhkayrerkkheqK--Ksflps 82 79**************************.99***********5589****999988765540..145553 PP NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v +g++vg+kktLv+ykgrap+g++t+Wvmheyrl GSMUA_AchrUn_randomP08190_001 83 KDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKVSF-QGRAVGTKKTLVYYKGRAPRGSRTHWVMHEYRL 156 666*********************************9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-57	4	179	IPR003441	NAC domain
PROSITE profile	PS51005	58.306	6	179	IPR003441	NAC domain
Pfam	PF02365	4.5E-29	7	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MAPVTLPPGF RFHPTDEELV AYYLKRKING YRFELEIIPE VDLYKCEPWE LPGISFLPIS 60 ILNHKAYRER KKHEQKKSFL PSKDLEWYFF SPRDRKYPNG SRTNRATRAG YWKATGKDRK 120 VSFQGRAVGT KKTLVYYKGR APRGSRTHWV MHEYRLDEKE SEMPSGLQES YALCRVFMKS 180 TTAGAKIIEH YGSPRVEPLQ WKPADSHTAE LSSDRIKIGE EFGSRGRPSP SETHSSETIQ 240 GSTLDASASE NRQWMQYLSE EAFATGPTFH DPACFPCTPR KIDIEIECAR LQRRLTLPPL 300 EMDDFSCNSL NDSKASLSGT SRGSASQVEI LQEVLSVASA TRDLINSSIY PNIFC

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MAPVTLPPGF RFHPTDEELV AYYLKRKING YRFELEIIPE VDLYKCEPWE LPGISFLPIS  60
ILNHKAYRER KKHEQKKSFL PSKDLEWYFF SPRDRKYPNG SRTNRATRAG YWKATGKDRK  120
VSFQGRAVGT KKTLVYYKGR APRGSRTHWV MHEYRLDEKE SEMPSGLQES YALCRVFMKS  180
TTAGAKIIEH YGSPRVEPLQ WKPADSHTAE LSSDRIKIGE EFGSRGRPSP SETHSSETIQ  240
GSTLDASASE NRQWMQYLSE EAFATGPTFH DPACFPCTPR KIDIEIECAR LQRRLTLPPL  300
EMDDFSCNSL NDSKASLSGT SRGSASQVEI LQEVLSVASA TRDLINSSIY PNIFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	1	183	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	1	183	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	1	183	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	1	183	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	1	183	15	172	NAC domain-containing protein 19
3swm_B	2e-55	1	183	15	172	NAC domain-containing protein 19
3swm_C	2e-55	1	183	15	172	NAC domain-containing protein 19
3swm_D	2e-55	1	183	15	172	NAC domain-containing protein 19
3swp_A	2e-55	1	183	15	172	NAC domain-containing protein 19
3swp_B	2e-55	1	183	15	172	NAC domain-containing protein 19
3swp_C	2e-55	1	183	15	172	NAC domain-containing protein 19
3swp_D	2e-55	1	183	15	172	NAC domain-containing protein 19
4dul_A	1e-55	1	183	12	169	NAC domain-containing protein 19
4dul_B	1e-55	1	183	12	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009386284.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	2e-91	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	M0U7D0	0.0	M0U7D0_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP08190_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-102	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]