PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP07620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 478aa    MW: 52935 Da    PI: 4.3239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP07620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.41.8e-121049141
                            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41
                                   l+pGfrFhPtdeelv +yL++k+ g++l++ ++i+evd+y+
  GSMUA_AchrUn_randomP07620_001 10 LAPGFRFHPTDEELVGYYLQRKICGRPLRV-DAIAEVDLYN 49
                                   579***************************.99******97 PP
2NAM80.53.5e-254811561129
                            NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    +   d+ky++ +r+nrat +g+Wk tgkd++v + + ++vg+kktLvf+ grap+g++t+Wvmheyrle
  GSMUA_AchrUn_randomP07620_001  48 YNALDRKYSNRSRTNRATGHGFWKMTGKDRPVRH-RARVVGMKKTLVFHAGRAPHGSRTNWVMHEYRLE 115
                                    566799****************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-468134IPR003441NAC domain
PROSITE profilePS5100532.30810134IPR003441NAC domain
PfamPF023651.2E-2212114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MIGASSSAAL APGFRFHPTD EELVGYYLQR KICGRPLRVD AIAEVDLYNA LDRKYSNRSR  60
TNRATGHGFW KMTGKDRPVR HRARVVGMKK TLVFHAGRAP HGSRTNWVMH EYRLEDEELA  120
HSGDAYVVCR IFQKSGSGPQ NGAQYGALFV EEEWEEEADG LVVVRDGSDH VREQEHFQFT  180
DILQNQELGN QHEDAPTIVE APDGQDGGDH TDDPTMLLEM LADPTSIESM VDCVNEPKLQ  240
INPTHVNGLG EQGSMENCGH SSCHNNGYVE LNDILNASNV GCHCTFEDST GDLLGTFCEQ  300
NTVEGVENSS LQGMTNTETF SDPENHYSNH PELLHLSPLL DHFYLQFSDP GQRAEDYTMF  360
YDACSNDLPI TPDDCVLPNE LLHSPTADPS GFKFNDLMGF SDTTDYLYDD TTDFSEKVEC  420
INSPILGPSN FAEEVNHVYN ATTNNGGASS SDVPVAKNQF ENFTAAPGME KYAISLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-3641359169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386218.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLM0U7730.0M0U773_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP07620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-64NAC domain containing protein 2