PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP06460_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 511aa    MW: 58220.8 Da    PI: 8.8037
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP06460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94e-23210311199
                                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                    f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d+   +W++++i+r++++r++lt+GW+ Fv+a++
  GSMUA_AchrUn_randomP06460_001 210 FCKILTASDTSTHGGFSIPRRAAEKVfppldfsQQPPVQ--ELIARDLYDVEWKFRHIFRGQPKRHFLTTGWSVFVRAKR 287
                                    99*****************************85545444..8************************************** PP

                                    --TT-EEEEEE-SSSEE..EEEEE-S CS
                             B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                                    L +gD+v+F   ++++ +l+++++r+
  GSMUA_AchrUn_randomP06460_001 288 LVAGDSVLFI--WNEKNQLLLGIRRT 311
                                    **********..8899999****997 PP

2Auxin_resp112.93.1e-37337420183
                     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                    aahaa+t+s F+++YnPras+seFv++++k+ ka+  + vs+GmRf+m fete+ss rr++Gt++g+s ldpvrWp S+W
  GSMUA_AchrUn_randomP06460_001 337 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYTKAVFhTCVSIGMRFRMLFETEESSIRRYMGTITGISVLDPVRWPTSHW 416
                                    79********************************974779**************************************** PP

                     Auxin_resp  80 rsLk 83 
                                    + ++
  GSMUA_AchrUn_randomP06460_001 417 KTVQ 420
                                    *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-44195339IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-40203322IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-21209310No hitNo description
PROSITE profilePS5086312.534210312IPR003340B3 DNA binding domain
PfamPF023622.4E-21210311IPR003340B3 DNA binding domain
SMARTSM010192.5E-24210312IPR003340B3 DNA binding domain
PfamPF065072.4E-32337420IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGKCACVRQR TTSFLFCCQK FIHYPLSPLP FRGLRDSWEA RYGDLQEREL PRARISFWDQ  60
ESCVLCRRIL AAKAASFCSS SYYEAFYCWY QPASTRRGGE EMLGFGALAR LAGPLVSLPT  120
AGTRVVYFPQ GHSEQAAAST NKEVESHFPN YPSLLPQLLC RLHNVTLRAD VETDEVYAQM  180
TLQPLSPEEQ KVTYFPIEMG FTSKQPTNYF CKILTASDTS THGGFSIPRR AAEKVFPPLD  240
FSQQPPVQEL IARDLYDVEW KFRHIFRGQP KRHFLTTGWS VFVRAKRLVA GDSVLFIWNE  300
KNQLLLGIRR TNQPQTSASS SLVLSSDSMH IGLFAAAAHA AATNSRFTIF YNPRASPSEF  360
VIPLSKYTKA VFHTCVSIGM RFRMLFETEE SSIRRYMGTI TGISVLDPVR WPTSHWKTVQ  420
VGWDEATEGK RQCRARVSLW EVEPLTTFPM YPSLFPIGRS WHPGASFPFN SCLLYFIYLC  480
ISDIKENELN ALMWSRGLAA ERGMMYDIGI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-14011244360388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397956.10.0PREDICTED: auxin response factor 12-like isoform X1
RefseqXP_009397957.10.0PREDICTED: auxin response factor 12-like isoform X1
RefseqXP_018680638.10.0PREDICTED: auxin response factor 12-like isoform X1
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLM0U6V70.0M0U6V7_MUSAM; Auxin response factor
STRINGGSMUA_AchrUn_randomP06460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]