PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP06460_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 511aa MW: 58220.8 Da PI: 8.8037 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 4e-23 | 210 | 311 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k+lt sd++++g +++p++ ae+ ++++ + +l+ +d+ +W++++i+r++++r++lt+GW+ Fv+a++ GSMUA_AchrUn_randomP06460_001 210 FCKILTASDTSTHGGFSIPRRAAEKVfppldfsQQPPVQ--ELIARDLYDVEWKFRHIFRGQPKRHFLTTGWSVFVRAKR 287 99*****************************85545444..8************************************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 L +gD+v+F ++++ +l+++++r+ GSMUA_AchrUn_randomP06460_001 288 LVAGDSVLFI--WNEKNQLLLGIRRT 311 **********..8899999****997 PP | |||||||
2 | Auxin_resp | 112.9 | 3.1e-37 | 337 | 420 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 aahaa+t+s F+++YnPras+seFv++++k+ ka+ + vs+GmRf+m fete+ss rr++Gt++g+s ldpvrWp S+W GSMUA_AchrUn_randomP06460_001 337 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYTKAVFhTCVSIGMRFRMLFETEESSIRRYMGTITGISVLDPVRWPTSHW 416 79********************************974779**************************************** PP Auxin_resp 80 rsLk 83 + ++ GSMUA_AchrUn_randomP06460_001 417 KTVQ 420 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-44 | 195 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-40 | 203 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.38E-21 | 209 | 310 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 210 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 210 | 311 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-24 | 210 | 312 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.4E-32 | 337 | 420 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MGKCACVRQR TTSFLFCCQK FIHYPLSPLP FRGLRDSWEA RYGDLQEREL PRARISFWDQ 60 ESCVLCRRIL AAKAASFCSS SYYEAFYCWY QPASTRRGGE EMLGFGALAR LAGPLVSLPT 120 AGTRVVYFPQ GHSEQAAAST NKEVESHFPN YPSLLPQLLC RLHNVTLRAD VETDEVYAQM 180 TLQPLSPEEQ KVTYFPIEMG FTSKQPTNYF CKILTASDTS THGGFSIPRR AAEKVFPPLD 240 FSQQPPVQEL IARDLYDVEW KFRHIFRGQP KRHFLTTGWS VFVRAKRLVA GDSVLFIWNE 300 KNQLLLGIRR TNQPQTSASS SLVLSSDSMH IGLFAAAAHA AATNSRFTIF YNPRASPSEF 360 VIPLSKYTKA VFHTCVSIGM RFRMLFETEE SSIRRYMGTI TGISVLDPVR WPTSHWKTVQ 420 VGWDEATEGK RQCRARVSLW EVEPLTTFPM YPSLFPIGRS WHPGASFPFN SCLLYFIYLC 480 ISDIKENELN ALMWSRGLAA ERGMMYDIGI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-140 | 112 | 443 | 60 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397956.1 | 0.0 | PREDICTED: auxin response factor 12-like isoform X1 | ||||
Refseq | XP_009397957.1 | 0.0 | PREDICTED: auxin response factor 12-like isoform X1 | ||||
Refseq | XP_018680638.1 | 0.0 | PREDICTED: auxin response factor 12-like isoform X1 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | M0U6V7 | 0.0 | M0U6V7_MUSAM; Auxin response factor | ||||
STRING | GSMUA_AchrUn_randomP06460_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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