PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP05930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 109aa MW: 12401 Da PI: 9.9024 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 73 | 109 | 1 | 35 |
TSSS-H..HHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTt..eEdellvdavkqlGggtWktIartmgkgR 35 +g+WT Ed lv +vk++G g+W+++ ++mg+gR GSMUA_AchrUn_randomP05930_001 73 KGPWTSasAEDAVLVGYVKKYGEGNWNSVQKHMGLGR 109 577775226*************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.126 | 68 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.54E-6 | 70 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-9 | 71 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-5 | 73 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.56E-4 | 75 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MIRIENFRSS EVKYAAENSW RPELRRPILF WKMSRMSNES DERLIPRDQI DSPSIEQGCS 60 TGSVKGGNHM LKKGPWTSAS AEDAVLVGYV KKYGEGNWNS VQKHMGLGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387062.1 | 7e-30 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_009387063.1 | 7e-30 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_009387064.1 | 7e-30 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_018677225.1 | 7e-30 | PREDICTED: transcription factor GAMYB-like | ||||
Swissprot | A2WW87 | 1e-19 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | M0U6Q4 | 3e-75 | M0U6Q4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP05930_001 | 4e-76 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 3e-15 | myb domain protein 65 |