PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP04880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 21621.1 Da PI: 6.2432 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.6e-13 | 76 | 121 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT +E+ l++++ ++G g+W+ I+r ++Rt+ q+ s+ qky GSMUA_AchrUn_randomP04880_001 76 QAWTVDEHRLFLRGLDKYGRGDWRNISRNCVLTRTPTQVASHAQKY 121 79*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-5 | 7 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.782 | 70 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-16 | 70 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-9 | 74 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 74 | 121 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-10 | 76 | 121 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-15 | 76 | 125 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.03E-9 | 77 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEAEGEGCWN WEKNKAFEIT LAAYTKDHIN PWEKIAAAVP GTKLEEIKHH HKLLSNDVNS 60 IESGVLEGYQ KRSKGQAWTV DEHRLFLRGL DKYGRGDWRN ISRNCVLTRT PTQVASHAQK 120 YFLRQSSVST RTRTSILDIS SADSEEDLPV SITYALGTPA DPAAAAADQQ ASISGMGVSV 180 SESQVFAASN IEFYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385960.1 | 1e-128 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 1e-41 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | M0U6F0 | 1e-144 | M0U6F0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP04880_001 | 1e-145 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-39 | MYB family protein |
Publications ? help Back to Top | |||
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