PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP02930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LSD | ||||||||
Protein Properties | Length: 150aa MW: 15582.2 Da PI: 7.7108 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.2 | 3.7e-10 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL YP GA+sV+Ca+C +V GSMUA_AchrUn_randomP02930_001 27 CCGCRNLLIYPGGATSVCCAVCSAV 51 99********************998 PP | |||||||
2 | zf-LSD1 | 39.4 | 9.9e-13 | 73 | 97 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+tlL+Y rGA++V+C++C+tV GSMUA_AchrUn_randomP02930_001 73 CGSCHTLLMYVRGASRVQCSCCHTV 97 ************************9 PP | |||||||
3 | zf-LSD1 | 37.2 | 4.9e-12 | 111 | 135 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V GSMUA_AchrUn_randomP02930_001 111 CGNCHMLLMYQYGARSVKCAVCSFV 135 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.6E-10 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-7 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 4.72E-6 | 41 | 118 | IPR011031 | Multihaem cytochrome |
Gene3D | G3DSA:3.90.10.10 | 9.7E-5 | 42 | 132 | No hit | No description |
TIGRFAMs | TIGR01053 | 2.2E-14 | 70 | 99 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-10 | 73 | 97 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-9 | 108 | 137 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-11 | 111 | 135 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MPVPLAPYPT PPLPLALPNS GQSQVVCCGC RNLLIYPGGA TSVCCAVCSA VTTVPPPGFL 60 EFSAGTEMAQ LICGSCHTLL MYVRGASRVQ CSCCHTVNLA PEANQVAHVN CGNCHMLLMY 120 QYGARSVKCA VCSFVTSVGA SPSTEQKPGN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385724.1 | 1e-104 | PREDICTED: protein LSD1-like isoform X1 | ||||
Swissprot | Q0J7V9 | 4e-72 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | M0U5V5 | 1e-103 | M0U5V5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP02930_001 | 1e-103 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-57 | lsd one like 1 |
Publications ? help Back to Top | |||
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