PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_AchrUn_randomP02890_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 348aa MW: 38705.6 Da PI: 6.5844 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l d+v++ G g+W++ + g++R++k+c++rw +yl GSMUA_AchrUn_randomP02890_001 14 RGPWTPEEDKKLRDYVQKNGHGSWRRLPMLAGLNRCGKSCRLRWINYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.4e-19 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ l++d++ ++G++ W+tIa+ ++ gRt++++k++w+++l GSMUA_AchrUn_randomP02890_001 67 RGNFTEEEESLIIDLHSLHGNK-WSTIAASLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.036 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.5E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.57E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.115 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MGRSPCCDEV GLKRGPWTPE EDKKLRDYVQ KNGHGSWRRL PMLAGLNRCG KSCRLRWINY 60 LRPDIKRGNF TEEEESLIID LHSLHGNKWS TIAASLPGRT DNEIKNYWNT HLRKKLLRMG 120 IDPVTHQPRT DLRVLPGLPE LLAAANLAGG FTSSLNDPLH LQADAAHLIK LHLVQNLVQV 180 LTSNPTPNLN QIMGPFGSGF LRNYRLDDVD VPSSRQLESL LRHLPHGWLL QSTAPMASSL 240 STQGWQRFVD SLHRSTRESS RSVDAGDQTA AAATEDVSSV NEGCLPTSDS TPPFLSSSPV 300 NMNKGEAITI DGSINAPLEA WDANLDDQDD LGYWKEILDQ ISSWPNTP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385722.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9S9Z2 | 2e-78 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | M0U5V1 | 0.0 | M0U5V1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP02890_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-92 | myb domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|