PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP02760_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 32633.4 Da PI: 5.6464 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 4e-53 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 lppGfrF P+deelv++yL+kkv+++++++ ++ evd+++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratks GSMUA_AchrUn_randomP02760_001 10 LPPGFRFYPSDEELVCHYLQKKVANERVSC-GTMVEVDLHTREPWELPEVAKLSANEWYFFSFRDRKYATGSRTNRATKS 88 79**************************99.88***************88888999************************ PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 gyWkatgkd++v++ ++++vg++ktLvfy+grap+g kt+Wvmhe+rle GSMUA_AchrUn_randomP02760_001 89 GYWKATGKDRTVYDPaTRAVVGMRKTLVFYSGRAPNGMKTNWVMHEFRLE 138 **************977788***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-62 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.225 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFYPSD EELVCHYLQK KVANERVSCG TMVEVDLHTR EPWELPEVAK 60 LSANEWYFFS FRDRKYATGS RTNRATKSGY WKATGKDRTV YDPATRAVVG MRKTLVFYSG 120 RAPNGMKTNW VMHEFRLESP HTPPKEDWVL CRVFNKKKGD PTSSSLENEQ DNNHSLGCFS 180 SFMESSPPQH EQQFPDGCYE QITSSFPVVP PQEDNSSNTF LSLAALRYNF LGFPQDMDST 240 RMTGVGSSDL GGGDYGLVLD MGLEDHDLVG GGTANLGGIR FQGGRDQLFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-52 | 1 | 157 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385696.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 6e-62 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | M0U5T8 | 0.0 | M0U5T8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP02760_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-84 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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