PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP02340_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 467aa MW: 50747.1 Da PI: 8.1196

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP02340_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3e-16	39	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a +++G W++I +++g ++t+ q++s+ qk+ GSMUA_AchrUn_randomP02340_001 39 RERWTEEEHRRFLEALQLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 83 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-16	33	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.732	34	88	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.2E-18	37	86	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-12	38	86	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-13	39	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-9	39	79	IPR009057	Homeodomain-like
CDD	cd00167	8.02E-10	41	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MHVDVKISTT SIPQTKEIET SGEEQAPRIR KPYTITKQRE RWTEEEHRRF LEALQLYGRA 60 WRRIEEHIGT KTAVQIRSHA QKFFSKVYDS FLSLAISRKC GDSTGTLKAI EIPPPRPKRK 120 PVHPYPRKLC NLLNKGTPAL KQLQRPPLQI SAICEHENRS PTSVLSAVGS ETLESTLSNG 180 QMGCSSPVTS AAGSNDQDDG GQSLTVTDEA DIKLPHSGPA FSGLTVQDQP RMEIDQCRHH 240 AHALDESRLP TLKLFGKMVV VTDPNMSSAP PTAGDLAQPN LISSVGIKGD QEKKAECLPS 300 TRGVSPGDLT ASAGNTYSGL VPPLLYFFPL FGHNSTEPAF RPPSWWATRG NLPIPLVHSL 360 PECPQQFNQE MQREGSWTGS NTACISGTSP SNQNADGVGS RKEANSAQNG TMPLLRQQLS 420 SVQASTSGTV GSARGFAPYK RCTVESEVQH AVADPDDGGS QAIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MHVDVKISTT SIPQTKEIET SGEEQAPRIR KPYTITKQRE RWTEEEHRRF LEALQLYGRA  60
WRRIEEHIGT KTAVQIRSHA QKFFSKVYDS FLSLAISRKC GDSTGTLKAI EIPPPRPKRK  120
PVHPYPRKLC NLLNKGTPAL KQLQRPPLQI SAICEHENRS PTSVLSAVGS ETLESTLSNG  180
QMGCSSPVTS AAGSNDQDDG GQSLTVTDEA DIKLPHSGPA FSGLTVQDQP RMEIDQCRHH  240
AHALDESRLP TLKLFGKMVV VTDPNMSSAP PTAGDLAQPN LISSVGIKGD QEKKAECLPS  300
TRGVSPGDLT ASAGNTYSGL VPPLLYFFPL FGHNSTEPAF RPPSWWATRG NLPIPLVHSL  360
PECPQQFNQE MQREGSWTGS NTACISGTSP SNQNADGVGS RKEANSAQNG TMPLLRQQLS  420
SVQASTSGTV GSARGFAPYK RCTVESEVQH AVADPDDGGS QAIRLCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385654.1	0.0	PREDICTED: protein REVEILLE 1 isoform X1
TrEMBL	M0U5P6	0.0	M0U5P6_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP02340_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-39	MYB_related family protein