PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP02160_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 288aa    MW: 32160.1 Da    PI: 9.5417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP02160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
  GSMUA_AchrUn_randomP02160_001 14 KGPWTPEEDISLVSYIQEHGPGNWRAVPANTGLMRCSKSCRLRWTNYL 61
                                   79********************************************97 PP

2Myb_DNA-binding48.42.1e-1567112148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T +E  +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_AchrUn_randomP02160_001  67 RGNFTDQENRIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 112
                                    89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.14961IPR017930Myb domain
SuperFamilySSF466892.6E-3011108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-231568IPR009057Homeodomain-like
CDDcd001671.46E-101661No hitNo description
PROSITE profilePS5129425.1362116IPR017930Myb domain
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002498.4E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2469116IPR009057Homeodomain-like
CDDcd001675.44E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSTPTCSEEV GVKKGPWTPE EDISLVSYIQ EHGPGNWRAV PANTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQENRIIIH LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKKLRKTD  120
IHKARRALCE ALLIEKPADC ASDDSSRTAY ASSAENISRL LEGRTGNPAG ATDAADGAST  180
TTQADSAASS QGTASTSNSV VSRQPSSYQT PFSLLESWLF DETVAQGSEN HGNGRCWCLR  240
TYHYLQKLPS IYMSNGIEPK KKHQLMSHII NKSDRFTKKH FLTQQINI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-28141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-28141164105C-Myb DNA-Binding Domain
1msf_C3e-28141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385639.11e-162PREDICTED: myb-related protein 306-like
SwissprotP813927e-83MYB06_ANTMA; Myb-related protein 306
TrEMBLM0U5M80.0M0U5M8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP02160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-80myb domain protein 60
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]