PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP01280_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 283aa    MW: 31001.8 Da    PI: 7.6011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP01280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-172671147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                   +g+W+++Ed  l ++v+++G+++W+ I++ ++ gR++k+c++rw + 
  GSMUA_AchrUn_randomP01280_001 26 KGPWSPDEDAALQRLVQRHGPRNWSPISKSIP-GRSGKSCRLRWCNQ 71
                                   79******************************.***********985 PP

2Myb_DNA-binding56.56.6e-1880122347
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    ++T+eEde++++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_AchrUn_randomP01280_001  80 PFTAEEDEIIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 122
                                    89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4052176IPR017930Myb domain
SuperFamilySSF466891.95E-3123119IPR009057Homeodomain-like
SMARTSM007174.1E-152574IPR001005SANT/Myb domain
PfamPF002492.0E-172671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-252779IPR009057Homeodomain-like
CDDcd001676.93E-152870No hitNo description
SMARTSM007172.5E-1577125IPR001005SANT/Myb domain
PROSITE profilePS5129421.64378127IPR017930Myb domain
PfamPF002491.1E-1480122IPR001005SANT/Myb domain
CDDcd001676.69E-1380123No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2380126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MWGKVVDSMM AATGSSSSSK DVDRIKGPWS PDEDAALQRL VQRHGPRNWS PISKSIPGRS  60
GKSCRLRWCN QLSPQVEHRP FTAEEDEIII RAHRRFGNKW ATIARLLSGR TDNAIKNHWN  120
STLKRKCTPL FGDGGASSDG SVLLSGRTGM CLNPGSPSGS DLSDSGHHSH SVTVTGAVMP  180
PSSSPHQSHQ MEQITAAITD TTTPLIIYED PPQRCSTTAS AASAEEERRP EPFPLSAEVL  240
AVMQEMICKE VKCYMAGLEH HEVRHAESVR DTDINRIGLT KIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-40251273105C-Myb DNA-Binding Domain
1msf_C1e-40251273105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661411e-97AK066141.1 Oryza sativa Japonica Group cDNA clone:J013055K23, full insert sequence.
GenBankAP0058211e-97AP005821.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0094B20.
GenBankAP0149651e-97AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-97CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385523.20.0PREDICTED: transcription factor MYB44-like
SwissprotO231607e-75MYB73_ARATH; Transcription factor MYB73
TrEMBLM0U5E00.0M0U5E0_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP01280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-66myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]