PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP01280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31001.8 Da PI: 7.6011 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 26 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l ++v+++G+++W+ I++ ++ gR++k+c++rw + GSMUA_AchrUn_randomP01280_001 26 KGPWSPDEDAALQRLVQRHGPRNWSPISKSIP-GRSGKSCRLRWCNQ 71 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 80 | 122 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++++a++++G++ W+tIar + gRt++ +k++w++ GSMUA_AchrUn_randomP01280_001 80 PFTAEEDEIIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 122 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.405 | 21 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-31 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 25 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 26 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 27 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.93E-15 | 28 | 70 | No hit | No description |
SMART | SM00717 | 2.5E-15 | 77 | 125 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.643 | 78 | 127 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-14 | 80 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.69E-13 | 80 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 80 | 126 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MWGKVVDSMM AATGSSSSSK DVDRIKGPWS PDEDAALQRL VQRHGPRNWS PISKSIPGRS 60 GKSCRLRWCN QLSPQVEHRP FTAEEDEIII RAHRRFGNKW ATIARLLSGR TDNAIKNHWN 120 STLKRKCTPL FGDGGASSDG SVLLSGRTGM CLNPGSPSGS DLSDSGHHSH SVTVTGAVMP 180 PSSSPHQSHQ MEQITAAITD TTTPLIIYED PPQRCSTTAS AASAEEERRP EPFPLSAEVL 240 AVMQEMICKE VKCYMAGLEH HEVRHAESVR DTDINRIGLT KIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-40 | 25 | 127 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-40 | 25 | 127 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066141 | 1e-97 | AK066141.1 Oryza sativa Japonica Group cDNA clone:J013055K23, full insert sequence. | |||
GenBank | AP005821 | 1e-97 | AP005821.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0094B20. | |||
GenBank | AP014965 | 1e-97 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-97 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385523.2 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 7e-75 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | M0U5E0 | 0.0 | M0U5E0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP01280_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-66 | myb domain protein 73 |
Publications ? help Back to Top | |||
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