PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP00660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 807aa MW: 88737.5 Da PI: 6.3163

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP00660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.1	1.5e-27	551	601	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++sl+dl++y+s+++kdAAk++gvc+T+LKriCR++GI+RWP+Rkik++ GSMUA_AchrUn_randomP00660_001 551 QKNVSLSDLQQYYSGTLKDAAKSIGVCPTTLKRICRENGISRWPSRKIKKV 601 699**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	537	621	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-26	553	601	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.81E-22	701	793	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-21	706	787	No hit	No description
PROSITE profile	PS51745	23.482	708	790	IPR000270	PB1 domain
SMART	SM00666	1.2E-19	708	790	IPR000270	PB1 domain
CDD	cd06407	9.05E-30	711	789	No hit	No description
Pfam	PF00564	6.0E-17	711	789	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MDGFTPLQGG DKSPESDDLI GHSALMNIDT FTELCNPSIA DQLFVQFSYS SRSNSQPQTM 60 EVAVGMSKAS NSTVGVHSSI GGNSAAQRNI LQSQVISDPL HVDMTGKIAS SSSFPPCDVP 120 EADETENVIP RPTVGASLAE KLLKALSLFK ESAGGGILAQ AWLPLKQGNE YVLSTSYQPY 180 LLDQVLAGYR EASRLFTFSH SCCAVLELVT KKEKPDFDIE VASVCNALQH HDSLNQSVKE 240 CLVVYSNVLV KVLLIVNLQA VNLKTIKAHP TQQVLVTSLS SFAIFSLQTS QESAFTEILN 300 VLRAVCHAHM LPLALTWIPF SYFDQVMDEN TKNGNKEESF ILKKETMLCI RESACYVNDQ 360 RMLGFLHACS ENYLQKEQGI VGKAILSYQP IFFSDIKAFD VHHYPLAHHA RKFGLHAAVA 420 IRLRSTYTGN DDYILEFFLP VNCRGSDEQQ LLLNNLSVTL QRICRSLRTI SDADVAGYDA 480 SGIRIDRSGI DLSSTNSSEK NSQARHGEQN SASSLSDVQN MGPDNQREGC HLGQINCGSK 540 RQPRKSSRKL QKNVSLSDLQ QYYSGTLKDA AKSIGVCPTT LKRICRENGI SRWPSRKIKK 600 VNHSVQKIQS VINSAPGILE KLRYDPTTGS LVTEVSSPEI EISSASAGQG VLPIQHMESS 660 DGSIKGDIHS ESLECHKVSS SEQTAKKSVE TDLMPVDTSK LPVNGGSAIC VKATYKEDLV 720 RFKFYPFMGC NQLFEEIGKR FNLSIGTFQL KYKDDEEEWV MLVTDSDLQE CIEMLESLES 780 QSVRLLVQDI PSAVGSSGSS NSLFLKS

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MDGFTPLQGG DKSPESDDLI GHSALMNIDT FTELCNPSIA DQLFVQFSYS SRSNSQPQTM  60
EVAVGMSKAS NSTVGVHSSI GGNSAAQRNI LQSQVISDPL HVDMTGKIAS SSSFPPCDVP  120
EADETENVIP RPTVGASLAE KLLKALSLFK ESAGGGILAQ AWLPLKQGNE YVLSTSYQPY  180
LLDQVLAGYR EASRLFTFSH SCCAVLELVT KKEKPDFDIE VASVCNALQH HDSLNQSVKE  240
CLVVYSNVLV KVLLIVNLQA VNLKTIKAHP TQQVLVTSLS SFAIFSLQTS QESAFTEILN  300
VLRAVCHAHM LPLALTWIPF SYFDQVMDEN TKNGNKEESF ILKKETMLCI RESACYVNDQ  360
RMLGFLHACS ENYLQKEQGI VGKAILSYQP IFFSDIKAFD VHHYPLAHHA RKFGLHAAVA  420
IRLRSTYTGN DDYILEFFLP VNCRGSDEQQ LLLNNLSVTL QRICRSLRTI SDADVAGYDA  480
SGIRIDRSGI DLSSTNSSEK NSQARHGEQN SASSLSDVQN MGPDNQREGC HLGQINCGSK  540
RQPRKSSRKL QKNVSLSDLQ QYYSGTLKDA AKSIGVCPTT LKRICRENGI SRWPSRKIKK  600
VNHSVQKIQS VINSAPGILE KLRYDPTTGS LVTEVSSPEI EISSASAGQG VLPIQHMESS  660
DGSIKGDIHS ESLECHKVSS SEQTAKKSVE TDLMPVDTSK LPVNGGSAIC VKATYKEDLV  720
RFKFYPFMGC NQLFEEIGKR FNLSIGTFQL KYKDDEEEWV MLVTDSDLQE CIEMLESLES  780
QSVRLLVQDI PSAVGSSGSS NSLFLKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385447.1	0.0	PREDICTED: protein NLP2-like isoform X1
TrEMBL	M0U578	0.0	M0U578_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP00660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-121	Nin-like family protein