PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP00010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31335.9 Da PI: 8.8287 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl GSMUA_AchrUn_randomP00010_001 18 KGAWTVEEDLLLMNYIASHGEGQWNSLARCAGLRRTGKSCRLRWLNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.6e-17 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ GSMUA_AchrUn_randomP00010_001 71 RGNITPEEQLLILELHSRWGNR-WSKIAQCLP-GRTDNEIKNYWRT 114 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.847 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-31 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.71E-11 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 23.39 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-11 | 75 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MHPSFYRAPC CPPASVRKGA WTVEEDLLLM NYIASHGEGQ WNSLARCAGL RRTGKSCRLR 60 WLNYLRPDVR RGNITPEEQL LILELHSRWG NRWSKIAQCL PGRTDNEIKN YWRTRVEKQA 120 KQLRCDVDSQ RFKDMVRYMW MPRLAERILA SSGGSSAPLA STGGTASSTQ ACDVVTASES 180 VPSPGACDGL GSLDWEESLW SMVEVWTPAI QRNYTNCNSK ESSVFLVLFK CTFASISSSF 240 FSFFFSLLIF LYSFNFLSVT FALFFLLDVT KKYIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 18 | 120 | 7 | 108 | B-MYB |
1h8a_C | 7e-24 | 18 | 112 | 27 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385372.1 | 1e-135 | PREDICTED: transcription factor MYB108 | ||||
TrEMBL | M0U513 | 0.0 | M0U513_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP00010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-74 | myb domain protein 78 |