PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P30360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 310aa    MW: 34330.7 Da    PI: 8.8269
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P30360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.6e-13258307147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r+rW+  E+e l +av+++G g+Wk I +++    + Rt+ ++k++w++ 
  GSMUA_Achr9P30360_001 258 RKRWSSLEEETLRKAVRKHGVGNWKFILSCFSkifEDRTEVDLKDKWRNM 307
                            89**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.965253310IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-12255309IPR009057Homeodomain-like
SuperFamilySSF466895.02E-15255309IPR009057Homeodomain-like
SMARTSM007173.9E-9257310IPR001005SANT/Myb domain
PfamPF002492.9E-10258307IPR001005SANT/Myb domain
CDDcd116607.39E-18259309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MENEIARKQN AVVHLGKPTD KFDPMSAPEV EKVANALKSS CVDLHKVVVD PLPDAVMKAT  60
EVLKNRSFGM TNDVEELEIQ RQVGASGPVS AAKNGSKDNG ADEIVEQSKV GASGQVSAVK  120
TGSKDNGVDE IVEQSKKNDA LDVDGSMQQR KDDAVQSNRE PSVEKQSDGI DNRVQAAPTI  180
HAEMKGTGIS NTDGVQKRSL MDRNPTAHTF EWGEDPIESS SDKSPAAEKI TLPSPKRKKT  240
CSPLTIMENK KLVIRRKRKR WSSLEEETLR KAVRKHGVGN WKFILSCFSK IFEDRTEVDL  300
KDKWRNMTRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236258RKKTCSPLTIMENKKLVIRRKRK
2254259RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419575.10.0PREDICTED: uncharacterized protein LOC103999526
TrEMBLM0U4U30.0M0U4U3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P30360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.18e-11telomere repeat binding factor 3