PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P29750_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 249aa MW: 28491.1 Da PI: 9.8817

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P29750_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.3	2e-42	6	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 p GfrF Pt+eel+ +yL++k+++++ ++e+vi+ +d+y ++Pw+Lp ++ + ++w+fF++r++++a+g r++r+t sgyWk GSMUA_Achr9P29750_001 6 PLGFRFYPTEEELIGFYLQNKLNNRREDMERVIPVADVYCCDPWQLPpIsgeACGRDGEQWFFFCPRQEREANGGRPTRTTPSGYWKG 93 89*************************99***********9534554455788************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+k+t+vfy+g+ +kt+W m+eyr+ GSMUA_Achr9P29750_001 94 TGSPSLVYSSENRAIGVKRTMVFYQGSPLACTKTKWKMNEYRA 136 ***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-46	4	169	IPR003441	NAC domain
PROSITE profile	PS51005	45.001	5	170	IPR003441	NAC domain
Pfam	PF02365	8.7E-24	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTSTVPLGFR FYPTEEELIG FYLQNKLNNR REDMERVIPV ADVYCCDPWQ LPPISGEACG 60 RDGEQWFFFC PRQEREANGG RPTRTTPSGY WKGTGSPSLV YSSENRAIGV KRTMVFYQGS 120 PLACTKTKWK MNEYRALEEG ATGCSKHLRP RLRLYLQLRG EVSLCRVYTR SESVRSFDRR 180 PAAAAVTDER RTAEVPRSRP VPASATRSSS HHSSSSDGNG SRRPVPRRED DLTSMGVKEW 240 FSWQHLLRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-30	4	175	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-30	4	175	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-30	4	175	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-30	4	175	16	170	NO APICAL MERISTEM PROTEIN
4dul_A	6e-30	4	175	16	170	NAC domain-containing protein 19
4dul_B	6e-30	4	175	16	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419496.1	1e-164	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M0U4N2	0.0	M0U4N2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P29750_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-66	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]