PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P29480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 448aa    MW: 49209 Da    PI: 9.6186
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P29480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.76.1e-2585186199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+ltpsd+++ g +++p+ +a+++        +++++   + ++d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD+vv
  GSMUA_Achr9P29480_001  85 FAKILTPSDANNGGGFSVPRFCADSIfprldfnAYPPAQ--FILVYDVHGNHWKFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVV 170
                            89*********************999*****98888777..59999****************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F+  ++s+++ +v+++r+
  GSMUA_Achr9P29480_001 171 FM--RNSSGQILVGIRRT 186
                            **..669999******97 PP
2Auxin_resp77.82.8e-26211293283
             Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            ++ a +  +F+v+Y+ ra++s+Fvv +e+ve a++v+++ GmR++m++eteds++ ++  G v++v+  +   Wp+S+Wr+L+
  GSMUA_Achr9P29480_001 211 VRLAGMDLPFKVLYYARAGSSDFVVAAESVEVAMSVRWTTGMRVRMSVETEDSARMTWyEGRVSSVRMNSVDLWPRSPWRMLE 293
                            566777889*************************************************9*********99999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-3178191IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-2084185No hitNo description
Gene3DG3DSA:2.40.330.102.0E-3484188IPR015300DNA-binding pseudobarrel domain
PfamPF023629.8E-2385186IPR003340B3 DNA binding domain
SMARTSM010195.7E-2185187IPR003340B3 DNA binding domain
PROSITE profilePS5086313.36685187IPR003340B3 DNA binding domain
PfamPF065071.3E-24210292IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MATEEEAAAP AREMPTVEPQ VWKACAGTAA RIPAVGSRVY YFPQGHAEQA GSRPDFSTLP  60
SLFNAVLCRI SAVRLHASGG GFVSFAKILT PSDANNGGGF SVPRFCADSI FPRLDFNAYP  120
PAQFILVYDV HGNHWKFRHI YRGTPRRHLL TTGWSKFVNS KKLIAGDSVV FMRNSSGQIL  180
VGIRRTSRFC GPGFSSNARG RVPATSVVAA VRLAGMDLPF KVLYYARAGS SDFVVAAESV  240
EVAMSVRWTT GMRVRMSVET EDSARMTWYE GRVSSVRMNS VDLWPRSPWR MLEVTWDEPE  300
ILQNVGNVSP WQVVLVSASP QIESQFSVIK RIKMLESSEF CGDREGDMLF PVTELKSTIV  360
GSLPSSVFSY SVFPAGMQGA RHYSIGTPNL CDSIMNTNRR VLNDLQGVNA LRKDDVFVEL  420
KIGGTSQSGG SSPPSQAVWS SNPYRPTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-641531349387Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419389.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU61e-123ARFQ_ARATH; Auxin response factor 17
TrEMBLM0U4K50.0M0U4K5_MUSAM; Auxin response factor
STRINGGSMUA_Achr9P29480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-118auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]