PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P29350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 159aa MW: 18401.6 Da PI: 9.9067 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.7e-33 | 79 | 137 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+++fprsYYrCt++gC vkk+v+r + d+++v++tYeg H h+ GSMUA_Achr9P29350_001 79 LDDGFRWRKYGQKAVKNNRFPRSYYRCTHQGCDVKKQVQRLSMDESIVVTTYEGVHSHP 137 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 64 | 137 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-29 | 71 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.643 | 74 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-39 | 79 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-27 | 80 | 137 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MENYPILFPS STSFHSPRLS LSPSDTISNG QVFLGLQDGN NVPASHASRE NEGNPSKKKE 60 KKVRKPRYAF RTRSQLDILD DGFRWRKYGQ KAVKNNRFPR SYYRCTHQGC DVKKQVQRLS 120 MDESIVVTTY EGVHSHPVEK PNDNFEDILN QMQIYSSFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 69 | 136 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 69 | 136 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419488.1 | 1e-117 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q9FYA2 | 6e-54 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | M0U4J2 | 1e-116 | M0U4J2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P29350_001 | 1e-117 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 3e-56 | WRKY DNA-binding protein 75 |