PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P29320_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

M-type_MADS

Protein Properties

Length: 331aa MW: 36596.2 Da PI: 8.0376

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P29320_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.9	8.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s GSMUA_Achr9P29320_001 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.6E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.123	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-33	2	84	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.90E-46	2	76	No hit	No description
PRINTS	PR00404	3.3E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFCSS 60 SSMLKTLERY QKCNYGAPET NVISRETQIG TRRRAIQMSS DQQIHLGGPS TTGPPASGEH 120 PLHDETHDER PAAVSERYWQ LFNDPGLTPP GDTPAGPSQV SPKAFHDLAH QVRALTNIVQ 180 TIIPIVSPQA PPHATRPTQQ REPPARTHAP LPELPISPRN PATRPGSREA EDTVSRPEPE 240 APIADSTNAL RAQLRLVCQK LDEVQQEVRK SKGELGADGH QRSSFTPEIQ EQAIPPHFRL 300 PSLDAYDGAV DPTDHVAAFR TQMALYGTSE L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	2e-20	1	87	1	87	MEF2 CHIMERA
6bz1_B	2e-20	1	87	1	87	MEF2 CHIMERA
6bz1_C	2e-20	1	87	1	87	MEF2 CHIMERA
6bz1_D	2e-20	1	87	1	87	MEF2 CHIMERA
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM261779	1e-136	KM261779.1 Musa acuminata MADS-box transcription factor 2 isoform 2 (MalMADS2.2) mRNA, complete cds.
GenBank	KM261780	1e-136	KM261780.1 Musa acuminata MADS-box transcription factor 2 isoform 2 (MalMADS2.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018682896.1	1e-145	PREDICTED: probable linoleate 9S-lipoxygenase 4
TrEMBL	M0U4I9	0.0	M0U4I9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P29320_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-54	MIKC_MADS family protein