PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P27560_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 257aa MW: 29528.6 Da PI: 8.9215 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.4 | 1.3e-20 | 2 | 99 | 1 | 83 |
trihelix 1 rWtkqevlaLiearr.............emeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt++ v++Li ++ + +kk++W+ vs+ m e+g+ +sp+qC++k+++lnkryk+++ GSMUA_Achr9P27560_001 2 KWTDEIVRLLISVVAyvgdhddgaletfD--------GssaakrkhgatlQKKGKWKTVSRLMLEKGCYVSPQQCEDKFNDLNKRYKRLN 83 7*************966655554444330........0334445566666**************************************** PP trihelix 66 egekkrtsessstcpyfd 83 e+ +++t ++ + +f+ GSMUA_Achr9P27560_001 84 EILGRGTTCQV--WEWFK 99 *****965555..88886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.6E-19 | 2 | 96 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MKWTDEIVRL LISVVAYVGD HDDGALETFD GSSAAKRKHG ATLQKKGKWK TVSRLMLEKG 60 CYVSPQQCED KFNDLNKRYK RLNEILGRGT TCQVWEWFKR RALQLEEERV DVEAEALELE 120 KRHFKWQRFR SKKDWELERL RLENDRLRLE NECMILQVRQ KELELDIRWS RDPLDSSGRR 180 MEGEQPPDLI KSNENITLST PHPPLGAVLA GKPNLPSFPP PDRVQGGRRS TTGIRARGGI 240 LSDGASLLAD GAHLTSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419153.1 | 2e-59 | PREDICTED: uncharacterized protein LOC103999204 | ||||
TrEMBL | M0U413 | 0.0 | M0U413_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P27560_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-32 | sequence-specific DNA binding transcription factors |