PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27530_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 332aa    MW: 37344.7 Da    PI: 8.4664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.6e-55201461129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF+Ptdeel+++yL+kkv++  +++  +i evd++k+ePwdLp k++ +ekewyfF+ rd+ky+tg r+nratk+gyWkatgk
  GSMUA_Achr9P27530_001  20 LPPGFRFQPTDEELITHYLAKKVTDAGFHA-VAIGEVDLNKHEPWDLPCKANMGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGK 106
                            79*************************999.67***************988999********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            d+++++ +++lvg+kktLvfy+grapkgek+dWvmheyrle
  GSMUA_Achr9P27530_001 107 DTAIYK-GKSLVGMKKTLVFYRGRAPKGEKSDWVMHEYRLE 146
                            *****9.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6316168IPR003441NAC domain
PROSITE profilePS5100557.96420168IPR003441NAC domain
PfamPF023652.8E-2921145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDDGVAVLR RREDHRHMEL PPGFRFQPTD EELITHYLAK KVTDAGFHAV AIGEVDLNKH  60
EPWDLPCKAN MGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDTAI YKGKSLVGMK  120
KTLVFYRGRA PKGEKSDWVM HEYRLEGKYS VYNLPPTNEW VVCRVFHKIT SIKKPVKPNV  180
PLLPPSKETH VSYVSENQAA STFDSVYVTC FSNATAGTNG ELFDECFRSS LLRASAEPRQ  240
GSPAPIFLPM MSLSSSLCSG MQFQPDAILA KKPIRCSAER ELVSASQDTG LTAEMNPEIT  300
SVMSNDEIGR REFVPSASAG HGLLLHRCLW NC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-531717414171NO APICAL MERISTEM PROTEIN
1ut4_B5e-531717414171NO APICAL MERISTEM PROTEIN
1ut7_A5e-531717414171NO APICAL MERISTEM PROTEIN
1ut7_B5e-531717414171NO APICAL MERISTEM PROTEIN
3swm_A4e-531717417174NAC domain-containing protein 19
3swm_B4e-531717417174NAC domain-containing protein 19
3swm_C4e-531717417174NAC domain-containing protein 19
3swm_D4e-531717417174NAC domain-containing protein 19
3swp_A4e-531717417174NAC domain-containing protein 19
3swp_B4e-531717417174NAC domain-containing protein 19
3swp_C4e-531717417174NAC domain-containing protein 19
3swp_D4e-531717417174NAC domain-containing protein 19
4dul_A5e-531717414171NAC domain-containing protein 19
4dul_B5e-531717414171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8787291e-136FM878729.1 Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone MAC4-57A02-F.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419149.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-100NC100_ARATH; NAC domain-containing protein 100
TrEMBLM0U4100.0M0U410_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-99NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]