PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P27510_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 135aa MW: 15431.6 Da PI: 10.5226 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.7 | 2.3e-32 | 4 | 58 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+ Fv+av+qLGG +kAtPk ++++m+v+gLtl+h+kSHLQkYRl GSMUA_Achr9P27510_001 4 KPRLKWTSQLHQLFVDAVSQLGGVDKATPKYVMRVMGVPGLTLHHLKSHLQKYRL 58 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.45 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-31 | 2 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.68E-17 | 3 | 61 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-24 | 4 | 59 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-7 | 6 | 57 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MDSKPRLKWT SQLHQLFVDA VSQLGGVDKA TPKYVMRVMG VPGLTLHHLK SHLQKYRLAK 60 NRESSIPRGN RRRDAKVTHR WTSEDATTQD EANEAPPQCE TTLKMQMAVQ RKLQEQIEAS 120 ALGDTRSHGF QLNWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 3 | 62 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419148.1 | 3e-84 | PREDICTED: myb family transcription factor PHL8 isoform X2 | ||||
Swissprot | F4I274 | 1e-30 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
Swissprot | Q9SQQ9 | 3e-30 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | M0U408 | 7e-97 | M0U408_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P27510_001 | 1e-97 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16835 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 5e-33 | G2-like family protein |
Publications ? help Back to Top | |||
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