PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27380_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 260aa    MW: 28854.6 Da    PI: 7.1385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-161561248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           g+WT++Ed  lv ++k +G g W++ +++ g++R++k+c++rw++yl
  GSMUA_Achr9P27380_001 15 GAWTAQEDHVLVSYIKVHGDGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                           89*******************************************97 PP

2Myb_DNA-binding52.31.3e-1667111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  GSMUA_Achr9P27380_001  67 RGNISDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                            7899******************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.498961IPR017930Myb domain
SuperFamilySSF466891.15E-2712108IPR009057Homeodomain-like
SMARTSM007176.5E-101363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221568IPR009057Homeodomain-like
CDDcd001671.04E-81661No hitNo description
PROSITE profilePS5129424.97662116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2469116IPR009057Homeodomain-like
CDDcd001672.15E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRKPCCVRE GLRTGAWTAQ EDHVLVSYIK VHGDGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI SDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVHGNA  120
SQTKPILNVS LADSTTAGTG AAGDASVVQT KAQRCTKTFF HQDQGLLPAP IDHQRHESTT  180
AEPTSPSKAP QSDVSLDGVP LVPGEEDEAV CFSMSPNSTL LLDMPSMEDW IGSDCFQPDI  240
DFSFTSVASF FDTEEWLNWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419136.10.0PREDICTED: anthocyanin regulatory C1 protein-like
TrEMBLM0U3Z50.0M0U3Z5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-61MYB family protein