PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P26140_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 315aa    MW: 35115.2 Da    PI: 6.9968
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P26140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.5e-53241541128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                            lppGfrFhP+deel+++yL++k++g+          ++++vd++k+ePwdLp+++  + kewyfFs rd+kyatg+r+nrat sgyWk
  GSMUA_Achr9P26140_001  24 LPPGFRFHPRDEELICDYLAAKLAGDGgvgfRGWPIMVEDVDLNKCEPWDLPATACVGGKEWYFFSLRDRKYATGQRTNRATMSGYWK 111
                            79***********************99766422223699*************7777799***************************** PP

                    NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atgkd++v + kg lvg++ktLvfy+grapkg+kt+Wvmheyr+
  GSMUA_Achr9P26140_001 112 ATGKDRSVAR-KGFLVGMRKTLVFYQGRAPKGKKTEWVMHEYRM 154
                            *********9.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-6214177IPR003441NAC domain
PROSITE profilePS5100556.3824177IPR003441NAC domain
PfamPF023654.2E-2725154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVAVCELPVI DATMSILSMV EAKLPPGFRF HPRDEELICD YLAAKLAGDG GVGFRGWPIM  60
VEDVDLNKCE PWDLPATACV GGKEWYFFSL RDRKYATGQR TNRATMSGYW KATGKDRSVA  120
RKGFLVGMRK TLVFYQGRAP KGKKTEWVMH EYRMEESAAT PNLPFKEDWV LCRVFYKSRG  180
MSTKPSMETS HDDSSPQSLP ALMDNYITLD QTPLNLEGFE QVPCFSSTAP NLAPHLPPVE  240
RDMPLPRCLA QTGGLPDPSS GLNHLTGDRK VLRSVLNNLT KLEDDPKGEV VPNFGEGSLG  300
AYLTQRSLAS TWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-491917812166NO APICAL MERISTEM PROTEIN
1ut4_B2e-491917812166NO APICAL MERISTEM PROTEIN
1ut7_A2e-491917812166NO APICAL MERISTEM PROTEIN
1ut7_B2e-491917812166NO APICAL MERISTEM PROTEIN
3swm_A2e-491917815169NAC domain-containing protein 19
3swm_B2e-491917815169NAC domain-containing protein 19
3swm_C2e-491917815169NAC domain-containing protein 19
3swm_D2e-491917815169NAC domain-containing protein 19
3swp_A2e-491917815169NAC domain-containing protein 19
3swp_B2e-491917815169NAC domain-containing protein 19
3swp_C2e-491917815169NAC domain-containing protein 19
3swp_D2e-491917815169NAC domain-containing protein 19
4dul_A2e-491917812166NAC domain-containing protein 19
4dul_B2e-491917812166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419008.20.0PREDICTED: NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE62e-94NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0U3M10.0M0U3M1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P26140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-97NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]