PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P26140_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 35115.2 Da PI: 6.9968 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.5e-53 | 24 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhP+deel+++yL++k++g+ ++++vd++k+ePwdLp+++ + kewyfFs rd+kyatg+r+nrat sgyWk GSMUA_Achr9P26140_001 24 LPPGFRFHPRDEELICDYLAAKLAGDGgvgfRGWPIMVEDVDLNKCEPWDLPATACVGGKEWYFFSLRDRKYATGQRTNRATMSGYWK 111 79***********************99766422223699*************7777799***************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v + kg lvg++ktLvfy+grapkg+kt+Wvmheyr+ GSMUA_Achr9P26140_001 112 ATGKDRSVAR-KGFLVGMRKTLVFYQGRAPKGKKTEWVMHEYRM 154 *********9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-62 | 14 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.38 | 24 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-27 | 25 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MVAVCELPVI DATMSILSMV EAKLPPGFRF HPRDEELICD YLAAKLAGDG GVGFRGWPIM 60 VEDVDLNKCE PWDLPATACV GGKEWYFFSL RDRKYATGQR TNRATMSGYW KATGKDRSVA 120 RKGFLVGMRK TLVFYQGRAP KGKKTEWVMH EYRMEESAAT PNLPFKEDWV LCRVFYKSRG 180 MSTKPSMETS HDDSSPQSLP ALMDNYITLD QTPLNLEGFE QVPCFSSTAP NLAPHLPPVE 240 RDMPLPRCLA QTGGLPDPSS GLNHLTGDRK VLRSVLNNLT KLEDDPKGEV VPNFGEGSLG 300 AYLTQRSLAS TWNPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-49 | 19 | 178 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-49 | 19 | 178 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-49 | 19 | 178 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-49 | 19 | 178 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-49 | 19 | 178 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-49 | 19 | 178 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-49 | 19 | 178 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419008.2 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 2e-94 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0U3M1 | 0.0 | M0U3M1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P26140_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 9e-97 | NAC domain containing protein 1 |