PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr9P25110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35537.9 Da PI: 6.884 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.1 | 6.3e-11 | 13 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G +W+t R++k+c++rw +yl GSMUA_Achr9P25110_001 13 RGLWSPEEDEKLIRYITSHGHSCWST--------RCGKSCRLRWINYL 52 788**********************9........899*********97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 58 | 101 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++e++ + +d+++ lG++ W+ Ia++++ gRt++++k++w++ GSMUA_Achr9P25110_001 58 RGSFSAEDERIVIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 101 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-18 | 4 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.314 | 8 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-24 | 11 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-7 | 12 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-9 | 13 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-9 | 16 | 52 | No hit | No description |
PROSITE profile | PS51294 | 25.362 | 53 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-24 | 56 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-15 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 58 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.47E-11 | 60 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MGHHCCSKQK VRRGLWSPEE DEKLIRYITS HGHSCWSTRC GKSCRLRWIN YLRPDLKRGS 60 FSAEDERIVI DVHRILGNKW AQIAKHLPGR TDNEVKNFWN SCIKKKLLAQ GLDPKTHNLI 120 PAAARSNGAN SAEPPRFRYA QSSTCTPFTI SSSIKSFDDM NNSMDLNPPA SFHETAAPVS 180 NFQYQDNHVL MSFKDQNGFS SSSSSLDYTN IASSSFHQPG FIDDCMWDSS VEPLQALRQI 240 EVGHEQGVDQ LQVQPSMCKM FFNEANKKGP VMEISDSNGG GGATFNLEML DNAWLPCVEL 300 SSGSFMDQLQ WDYWV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 13 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009418792.1 | 0.0 | PREDICTED: myb-related protein Zm38 | ||||
TrEMBL | M0U3B8 | 0.0 | M0U3B8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P25110_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-77 | myb domain protein 67 |