PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P25110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 315aa    MW: 35537.9 Da    PI: 6.884
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P25110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.3e-111352148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l+++++ +G  +W+t        R++k+c++rw +yl
  GSMUA_Achr9P25110_001 13 RGLWSPEEDEKLIRYITSHGHSCWST--------RCGKSCRLRWINYL 52
                           788**********************9........899*********97 PP
2Myb_DNA-binding491.4e-1558101146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++++e++ + +d+++ lG++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr9P25110_001  58 RGSFSAEDERIVIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 101
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-18455IPR009057Homeodomain-like
PROSITE profilePS5129412.314852IPR017930Myb domain
SuperFamilySSF466897.11E-241199IPR009057Homeodomain-like
SMARTSM007173.2E-71254IPR001005SANT/Myb domain
PfamPF002491.6E-91352IPR001005SANT/Myb domain
CDDcd001671.03E-91652No hitNo description
PROSITE profilePS5129425.36253107IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2456107IPR009057Homeodomain-like
SMARTSM007178.8E-1557105IPR001005SANT/Myb domain
PfamPF002496.2E-1458101IPR001005SANT/Myb domain
CDDcd001678.47E-1160100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGHHCCSKQK VRRGLWSPEE DEKLIRYITS HGHSCWSTRC GKSCRLRWIN YLRPDLKRGS  60
FSAEDERIVI DVHRILGNKW AQIAKHLPGR TDNEVKNFWN SCIKKKLLAQ GLDPKTHNLI  120
PAAARSNGAN SAEPPRFRYA QSSTCTPFTI SSSIKSFDDM NNSMDLNPPA SFHETAAPVS  180
NFQYQDNHVL MSFKDQNGFS SSSSSLDYTN IASSSFHQPG FIDDCMWDSS VEPLQALRQI  240
EVGHEQGVDQ LQVQPSMCKM FFNEANKKGP VMEISDSNGG GGATFNLEML DNAWLPCVEL  300
SSGSFMDQLQ WDYWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131077108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418792.10.0PREDICTED: myb-related protein Zm38
TrEMBLM0U3B80.0M0U3B8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P25110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-77myb domain protein 67