PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P23940_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 241aa MW: 27584.8 Da PI: 5.2225

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P23940_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.4	7.7e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv++yLk+k++g k+el e+i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+t GSMUA_Achr9P23940_001 6 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-EIIPEVDLYKCEPWDLAgKsFLPSRDPEWYFFGQRDRKYPNGFRTNRATRAGYWKST 92 79**************************.99**********85335556888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v++ +++++g+kktLv+ykgrap+g++t+Wvmheyrl GSMUA_Achr9P23940_001 93 GKDRRVCH-QNRAIGMKKTLVYYKGRAPQGVRTSWVMHEYRL 133 ****.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-62	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	58.973	6	152	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAPMGLPPGF RFHPTDEELV NYYLKRKIHG LKIELEIIPE VDLYKCEPWD LAGKSFLPSR 60 DPEWYFFGQR DRKYPNGFRT NRATRAGYWK STGKDRRVCH QNRAIGMKKT LVYYKGRAPQ 120 GVRTSWVMHE YRLDDKECED TDSYALCRVF KKTVACTRGE EQGQCSSTLA ESLRDSMAEI 180 ETHSPDMPMG SSSLRVDDDH DGDDEAKDDS WMQFIIDDAW CSNVSNNDGG DEPSCVAAVA 240 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-52	2	152	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418670.1	1e-174	PREDICTED: NAC domain-containing protein 45-like isoform X1
Swissprot	A4VCM0	6e-87	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	M0U301	0.0	M0U301_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P23940_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-110	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]