PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P23760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 209aa    MW: 23133.6 Da    PI: 6.5138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P23760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74e-111155345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                            WT e ++ + +a + ++ +   +W++Ia+ ++ g++ +++++++ 
  GSMUA_Achr9P23760_001 11 VWTREQEKAFENALATHPEDcgdRWEKIAAGVP-GKSIEDIRHHYE 55
                           6********************************.**********96 PP
2Myb_DNA-binding38.82.2e-12110154347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  GSMUA_Achr9P23760_001 110 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVISRTPTQVASHAQKY 154
                            6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-4456IPR009057Homeodomain-like
PROSITE profilePS512938.874762IPR017884SANT domain
SMARTSM007177.7E-8860IPR001005SANT/Myb domain
PfamPF002498.4E-101155IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-101163IPR009057Homeodomain-like
CDDcd001673.07E-91258No hitNo description
PROSITE profilePS5129416.985102159IPR017930Myb domain
SuperFamilySSF466891.57E-16105160IPR009057Homeodomain-like
SMARTSM007176.6E-10107157IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17107157IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.5E-10110153IPR009057Homeodomain-like
PfamPF002496.9E-11110154IPR001005SANT/Myb domain
CDDcd001671.08E-9110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVKEEESCCS VWTREQEKAF ENALATHPED CGDRWEKIAA GVPGKSIEDI RHHYELLVED  60
IDDIESGRVP VPSYLPVEGG GAKKGGNSHG DPSHGGRTSR SDQERRKGIA WTEDEHRLFL  120
LGLDKYGKGD WRSISRNFVI SRTPTQVASH AQKYFIRLNS MNKERRRTSI HDITSVGDGD  180
ASAPQGPVTG LASGSATVNR PELQFPVPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1712831181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418647.11e-155PREDICTED: transcription factor DIVARICATA
RefseqXP_009418649.11e-155PREDICTED: transcription factor DIVARICATA
RefseqXP_018686716.11e-155PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN62e-92SRM1_ARATH; Transcription factor SRM1
TrEMBLM0U2Y31e-154M0U2Y3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P23760_0011e-154(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-90MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]