PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P23340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 1127aa    MW: 126385 Da    PI: 4.842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P23340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.2e-13853248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  GSMUA_Achr9P23340_001  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                           78*****************************.************986 PP
2Myb_DNA-binding32.61.9e-1060103248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  GSMUA_Achr9P23340_001  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                            68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139215.6E-131070No hitNo description
CDDcd001674.21E-121053No hitNo description
SuperFamilySSF466898.63E-2133107IPR009057Homeodomain-like
CDDcd116594.32E-3155106No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118313.6E-59407656IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP QGFFDVSGEE RPVEQPKFPT  240
TIEELEGKRR ADIEAQLRKQ DVARNKIAQR QDAPSAILQV NKLNDPEAVR KRSKLMLPAP  300
QISDQELEEI AKMGYASDLV LANEELDEGS GATHALLANY SQTPRPGITP LRTPQRTPGG  360
KGDAIMMEAE NLARLRESQT PLFGGENPEL HPSDFSGVTP RKREIQTPNP MATPSATPGP  420
GLTPRIGMTP SRDGYSFGIT PKGTPFRDEL HINEDIEMQD TAKMELHRQA ELKRNLRFGL  480
NNLPQPKNEY QIVIQPIPEE HEESEEKVEE DMSDRLAREK AQEQARQEAL LRKRSKVLQR  540
ELPRPPTASL EIIKKMLMRG DEDRSSFVPP TPFEQADEMI NRELLVLLEH DNAKYPIDEK  600
TDEKKKKGTK HLANGKSSAI PELEDLEEDQ LKEADSLIKE EIQFLRVVMG HENESFDDFV  660
KARDACQEDL MFFPARSTYG LASVAGNNEK LAALQNEFEI VKKRMDDEAK RATRLEQKIK  720
ILTHGYQARA GKLWSQVEAT FKQVDTAATE LECFQVLQKQ ELLAATYRVN SLVEEVTKQK  780
ALEQNLQHRY GDLLAEHDRV KRLLEEHKMR LRMEEEIAAR NRALEEEAAA RNRALEEEAA  840
AMNRALEEEA AAMNRALEEE AAARNPVPVE EAAEKNVTQE ETAANNHAMN EELADKKDHL  900
DSDHAEDGTS NEEPIQGEAT HCVGIISNGT DDLKEQMPVA NSVIVSGDVP QLGTEEKMMV  960
DDKMTLNPVD DNMLPIVLVE STGVIPQADS GVLNSDVVGA SVGMEDATIS DVSNQEVAAS  1020
MTQPILSLQN TNEASASDIG SQMAQDDDQQ VGLELVDSGN LVVDGSVSNA DAHVDNVNVN  1080
PSVTDHASGG LSSETVMTSS EISANPAHLF LQSFAVSWFA SLSFIFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013799Cell division cycle 5-like protein
5xjc_L0.028013799Cell division cycle 5-like protein
5yzg_L0.028013799Cell division cycle 5-like protein
5z56_L0.028013799Cell division cycle 5-like protein
5z57_L0.028013799Cell division cycle 5-like protein
5z58_L0.028013799Cell division cycle 5-like protein
6ff4_L0.028013799Cell division cycle 5-like protein
6ff7_L0.028013799Cell division cycle 5-like protein
6icz_L0.028013799Cell division cycle 5-like protein
6id0_L0.028013799Cell division cycle 5-like protein
6id1_L0.028013799Cell division cycle 5-like protein
6qdv_O0.028013799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRHRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418597.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLM0U2U30.0M0U2U3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P23340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]