PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P22690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 291aa    MW: 31868.7 Da    PI: 5.6345
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P22690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.6e-09751442
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           + C+ + + + + +C+ +   lC++C  ++H+       H++vp+
  GSMUA_Achr9P22690_001  7 PSCESCRSAPSTVYCRADAAALCATCDASIHSAnllarrHQRVPV 51
                           78*****************************66899999*99986 PP
2CCT68.71.5e-23222265144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eKrk RkFeK++rY+sRKa+Ae+RpR+KGrF+k++
  GSMUA_Achr9P22690_001 222 REARVMRYREKRKARKFEKTVRYASRKAYAETRPRIKGRFAKKS 265
                            9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.69451IPR000315B-box-type zinc finger
SMARTSM003361.1E-15451IPR000315B-box-type zinc finger
PfamPF006432.8E-7751IPR000315B-box-type zinc finger
CDDcd000217.68E-11751No hitNo description
PROSITE profilePS5101716.728222264IPR010402CCT domain
PfamPF062036.5E-18222264IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKVEGSPSCE SCRSAPSTVY CRADAAALCA TCDASIHSAN LLARRHQRVP VLLALAGGGL  60
VVRPSLTLPY HIGVPVGLDE SEREDDEEEE AASWLLLDPV KGNGQGAAAL PPFAEVDEFL  120
DLVGYNAGEN QGSECCNGPM QQQQLQYSYE TSEESECLVP NELHQLQQSL QMEHGASNGL  180
NYSVSLSSVD ASVVPDTSNT SHIRASKGTI HLFSPRFNPM DREARVMRYR EKRKARKFEK  240
TVRYASRKAY AETRPRIKGR FAKKSDAELE VDHMFSVAVL ADSSFGVVPS F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418532.10.0PREDICTED: zinc finger protein CO3-like
SwissprotO821171e-64CO3_ORYSJ; Zinc finger protein CO3
TrEMBLM0U2M80.0M0U2M8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P22690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.13e-37CONSTANS-like 1