PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P22600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 288aa    MW: 31750 Da    PI: 9.2202
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P22600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-18550147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W+ eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + 
  GSMUA_Achr9P22600_001  5 KGPWSIEEDEALRRLVERHGPRNWTLISRSIP-GRSGKSCRLRWCNQ 50
                           79******************************.***********985 PP
2Myb_DNA-binding56.46.9e-1859101347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  GSMUA_Achr9P22600_001  59 PFTPEEDETIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 101
                            89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.533155IPR017930Myb domain
SuperFamilySSF466891.8E-32298IPR009057Homeodomain-like
SMARTSM007171.4E-15453IPR001005SANT/Myb domain
PfamPF002498.2E-18550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-25658IPR009057Homeodomain-like
CDDcd001671.39E-15749No hitNo description
SMARTSM007174.2E-1556104IPR001005SANT/Myb domain
PROSITE profilePS5129421.57857106IPR017930Myb domain
PfamPF002494.9E-1559101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2459105IPR009057Homeodomain-like
CDDcd001671.21E-1259102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDRIKGPWSI EEDEALRRLV ERHGPRNWTL ISRSIPGRSG KSCRLRWCNQ LSPQVEHRPF  60
TPEEDETIIR AHRRFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKASSVG PVPASASAQL  120
CLSPGSPTGT AGITVPPSSS PSTATFQEHD LQIEATGVSC TASPSSYAKD DPLTSLTLSL  180
PGTDRTVTSN QIHQCPDAKT GDDRPPQRPF QFSAELLAVM QEMVRSEVRS YMSCLEQSGI  240
TRALQPPEAA ICDAAPKRIG LKPNSVFVLS ITKIQRSNCR YLFPMTNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-3941063105C-Myb DNA-Binding Domain
1msf_C1e-3941063105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418521.11e-180PREDICTED: transcription factor MYB44-like
SwissprotO231603e-76MYB73_ARATH; Transcription factor MYB73
TrEMBLM0U2L90.0M0U2L9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P22600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-69myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]