PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P21760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 316aa    MW: 34340.5 Da    PI: 7.6484
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P21760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.42.4e-13240265126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +ktelC+ + ++G C+yG+ C+FaHg
  GSMUA_Achr9P21760_001 240 FKTELCNKWEESGVCPYGEHCRFAHG 265
                            79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-17235272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-10237271IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7239266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45239267IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10240265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-10273304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-8274304IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296277305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQRALVSSGG GDCLGVSMAS APSPYICNGD DFLSPYTIFS TIDTAPLPAS GTFAISPSSV  60
SFEEAEASST ATEDRLCLAR LALRYREITE RYGICLSHLC DTAEEVESLR RENASLRTAN  120
GELARRLELL AGKHTGRFPS SAGVERICGG HRSATGPVAE KHVSPPKITS VRSSGYLKLN  180
SAGGPGSDTN RNDRFRLRQA HLGGGSNDSK GERVGGADDE KEGESGGGAL ELEVFRQGMF  240
KTELCNKWEE SGVCPYGEHC RFAHGIAELR PVLRHPRYKT ELCRMILFGD ACTYGHRCQF  300
RHSLSPSDHQ RLRRCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-18240303467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673527.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X1
RefseqXP_018673528.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY54e-67C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLM0U2D50.0M0U2D5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P21760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-47C3H family protein