PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P21090_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YC

Protein Properties

Length: 251aa MW: 27819.4 Da PI: 6.6692

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P21090_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.9	4.6e-18	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P +rikki++adedv +i+ +P+l+ska elf+ +l r++ + + +tl+ ++++v +dfl+ +v + GSMUA_Achr9P21090_001 7 TRFPASRIKKIMQADEDVGKIALAVPILVSKALELFLQDLCDRTYEITLQRGAKTLNSLHLKQCVRTYSAYDFLTGVVNK 86 579***********************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.1E-19	3	88	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.4E-26	3	72	IPR009072	Histone-fold
Pfam	PF00808	1.3E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRKKLGTRFP ASRIKKIMQA DEDVGKIALA VPILVSKALE LFLQDLCDRT YEITLQRGAK 60 TLNSLHLKQC VRTYSAYDFL TGVVNKVPNL GGMEPCEDEK GICRRRKTLP HGDEVESNEN 120 CQLRSSKMAM TNTSVSPRGR GRGRGRGRGR PPTRARDVGH MKFEDDSSMF GDHDEIPLGQ 180 PEGTKENSHQ SALPSSTPVM NGSATSAVET KQEQCSAWPL PGGVDNISIE PSRLVQLTMQ 240 IDEDEDYDNE D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	148	RGRGRGRGRG
2	139	149	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418305.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	M0U268	0.0	M0U268_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P21090_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-50	nuclear factor Y, subunit C11