PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 291aa    MW: 31432.7 Da    PI: 6.8703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72.1e-115599345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           +WT e ++ + +a + ++ +   +W++Ia+ ++ g+t +++k+++ 
  GSMUA_Achr9P20620_001 55 SWTREQEKAFENALATHPEDcsdRWEKIAADVP-GKTIEEVKDHYE 99
                           7********************************.**********96 PP
2Myb_DNA-binding39.91e-12119163347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  GSMUA_Achr9P20620_001 119 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 163
                            6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-549100IPR009057Homeodomain-like
PROSITE profilePS5129310.38551106IPR017884SANT domain
SMARTSM007171.7E-852104IPR001005SANT/Myb domain
SuperFamilySSF466896.1E-1155108IPR009057Homeodomain-like
CDDcd001671.65E-955102No hitNo description
PfamPF002491.9E-95599IPR001005SANT/Myb domain
PROSITE profilePS5129417.014111168IPR017930Myb domain
SuperFamilySSF466891.79E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17116166IPR006447Myb domain, plants
SMARTSM007179.3E-11116166IPR001005SANT/Myb domain
CDDcd001672.92E-10119164No hitNo description
Gene3DG3DSA:1.10.10.609.3E-11119162IPR009057Homeodomain-like
PfamPF002493.2E-11119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRLLVPIRGG AKNCIFLVVW VGKTLGFCSS FLPLDFLVIC LLGETAMEEE SCGSSWTREQ  60
EKAFENALAT HPEDCSDRWE KIAADVPGKT IEEVKDHYEL LVEDINGIES DQERRKGIAW  120
TEDEHRLFLL GLEKYGKGDW RSISRNFVIS RTPTQVASHA QKYFIRLNSM NKERRRTSIH  180
DITSVANDDV SAPQGPITGQ NIGSVASTGK SIKQSPQSSS GAPGVGMYGT TIGQPVGGPL  240
TAVGTPVNLP VPGAPHMAYG MRAPVSGTVV PGAPVNTPPI AHPMPPASSN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1353110865RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418273.11e-172PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN62e-96SRM1_ARATH; Transcription factor SRM1
TrEMBLM0U2210.0M0U221_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-98MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]